BAC Information

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BAC

Clone NameMSMg01-170K19
Chromosome7 (Build37)
Map Location 78,116,553 - 78,116,866
singlet/doubletsinglet
Overlap genenone
Upstream geneNr2f2, LOC100042833, B130024G19Rik, LOC100042838, LOC665486, LOC100041957
Downstream geneLOC665535
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-170K19.T7 (MSMg01no170_k19.b1)MSMg01-170K19.TJ (MSMg01no170_k19.g1)
ACCAG367164AG367165
length779788
length of high quality
(start - end)
321 (45 - 365)182 (76 - 257)
definitionCHROMAT_FILE: MSMg01no170_k19.b1 PHD_FILE: MSMg01no170_k19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:40:41 2005CHROMAT_FILE: MSMg01no170_k19.g1 PHD_FILE: MSMg01no170_k19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:40:41 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCAACATTTGGGCATCCTTCGAGGGTAGCCAAGGAAGGGTGGAGGGA
GAGAAATGGGCAGGGTTGAGTGTGAATGGCCTGGCTTGTTGGGAGCCTGG
GGCAGCGGGTGTAATGGTATGCGAAGTGACCCTGCGCATAGGCACTGTGG
GTAGCCCCAGCTTTTTTGTAAAAGAAGCATTTGCAGTGGAGGTTTGGGTT
TCAGGCCTCCCAGTCATCAATCATCACAGCCCATTCTTCTCTTTGACAGC
TCAGTACAAGGCCTGACATTTGACTTCTTTGACCCCGGACTTATGTGCAG
ACACAAGCTGATGTCCTAAGTTACCCGAACGGCCCCCCTTTTTATAAAAG
TTAAGTTGATTTTTTTTNCCCCCCTGTAAAAAAAAAAAAAAAATATCTCG
GGGGGGGTGCGACTCCCCTCTGTATATGATTCTACTGGATAATATCGCAT
CTCCTCCGACCTCCGCTTTTCTATATTTACAAACGTCTCCCGTACCTTCC
TTCTATGCCCTTCCCTCCATTCCCCTCCCTTTCCTCTTCTATCCCCTTTC
CTCGCCCTCTGCTCCTTGCTCCTTCCCCTCTCTCTTCCCACTTCGACTCC
CTCCCACCTTCCTTCTTCCTCACCTTTTCTATCCTTCACCACTTCCTCTT
TTCCCTCTCTCCTCTTTTCTCTCTTTTTCCCACTCCTCCCCTCCTCTCCT
CCTCATTTCCCCTCCCCCCTCCCTCCCCG
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXACTCTTTTGATCAGGCTGGCCTTGA
ACACAGAGAGATCTCCTGTCTCTGCTTCCAGAGTGCTGGGATAAAGGGCG
TGTCCCACTCCTGACCTCCTTCAACTTTATTTCACATGTGCTTCTCTCTA
GAAACTCTCTTTCTGAGCAGGAAAATGGTTTTTTGTTGTTGTTGGTGGTG
GTTTTTTTTNNNTNNNTTNNNNNTCCTTTTTTTTTTTTCTTTTTTTTTCC
TCCTNCCCCCCTTTTTTTTTTTTTTTCCCCCCCCNTTCCCCTCCTCCNNC
NNCCCCTTTTTTTTTTTTTTTCCCCNNNCCANNNCCCTNTTNNNNNNNNT
TTTNTTNTTNTTTTTTTTTTCCCCCCCCCAAAAAAAAAAAAAAAAAACTT
CCTCGGTGGTGGCGCCTCTTTCCCTTCCCCCCTTTTTATCCCATTTCCTT
TTATTCCCTCTTTTCTCCTTCTCCCTTCCTTACTATCTCTTCTCCCTCCC
TTTTTTCCCCTTTATCCTACTCTTTTCCTTTTCCCCCCCTCTTCAATTTT
TTCTCCTCCCCTTTCCCCCCCTTTACCGCCCCCTTTCCCTGTTTCTTTTT
CCTTTCTTCCCTTCTCTTTCTATTATTTTTTCCCTTAATTCCCTGTTCCC
GTTTTTTTCATCCGCTTCTTCTCTTCCCCCTTCCTTATCTCCCATTACCT
TTCCTCCATTTTTTTTATCCCCCTCTTTTATCCCCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no170_k19.b1 MSMg01no170_k19.b1 CHROMAT_FILE:
MSMg01no170_k19.b1 PHD_FILE: MSMg01no170_k19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:40:41 2005
         (321 letters)



>mm_chr7_78116349_78117070
          Length = 722

 Score =  561 bits (290), Expect = e-164
 Identities = 308/314 (98%), Gaps = 1/314 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccaacatttgggcatccttc-gagggtagccaaggaagggtggagggagagaaat 63
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccaacatttgggcatccttccgagggtagccaaggaagggtggagggagagaaat 264

                                                                       
Query: 64  gggcagggttgagtgtgaatggcctggcttgttgggagcctggggcagcgggtgtaatgg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gggcagggttgagtgtgaatggcctggcttgttgggagcctggggcagcgggtgtaatgg 324

                                                                       
Query: 124 tatgcgaagtgaccctgcgcataggcactgtgggtagccccagcttttttgtaaaagaag 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tatgcgaagtgaccctgcgcataggcactgtgggtagccccagcttttttgtaaaagaag 384

                                                                       
Query: 184 catttgcagtggaggtttgggtttcaggcctcccagtcatcaatcatcacagcccattct 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 catttgcagtggaggtttgggtttcaggcctcccagtcatcaatcatcacagcccattct 444

                                                                       
Query: 244 tctctttgacagctcagtacaaggcctgacatttgacttctttgaccccggacttatgtg 303
           |||||||||||||||||||||||||||||||||||||  |   |||||||||||||||||
Sbjct: 445 tctctttgacagctcagtacaaggcctgacatttgacacccaagaccccggacttatgtg 504

                         
Query: 304 cagacacaagctga 317
           ||||||||||||||
Sbjct: 505 cagacacaagctga 518


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 722
Length adjustment: 9
Effective length of query: 312
Effective length of database: 713
Effective search space:   222456
Effective search space used:   222456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)