BAC Information

Click to search

BAC

Clone NameMSMg01-170M20
Chromosome7 (Build37)
Map Location 101,242,714 - 101,243,017
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040298, LOC666783, EG638305
Downstream geneEG545982, EG666816, LOC100040132
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-170M20.T7 (MSMg01no170_m20.b1)MSMg01-170M20.TJ (MSMg01no170_m20.g1)
ACCAG367252AG367253
length736837
length of high quality
(start - end)
321 (46 - 366)124 (74 - 197)
definitionCHROMAT_FILE: MSMg01no170_m20.b1 PHD_FILE: MSMg01no170_m20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:40:51 2005CHROMAT_FILE: MSMg01no170_m20.g1 PHD_FILE: MSMg01no170_m20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:40:51 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCAACAGTAAAATAAGTAGCAGGGAGATACTAGTCTGGGAGATAAA
ATTGAGAAAGGGATGATGTTGGCTACTTAAATTTAGAAAACAACAATTGG
GTAGCCATGCTGATTTCAGGGATAAATAAATAAATAAATAAATAAATAAA
TAAATAAATAAATGTAACAAAATTTTATCAACTAAGCAGGAGGTCTCCAT
TTTTCTGAACAAAGTATCATGGTTTCTGCTCTGTATCGGCATATTCTGAA
TTTCTTCAGTTATCTGTACTCTGCTACTAAATGAAGTTAAAATAGTGGAG
TACTTTGCAAATTTCCTTTTTATTCCCTTCCCATCCTGCTGTCTTTTCTT
TTAAGTTGTCAGCAAAATATAAGTAAAATAAAATAATATTACAGGCATAA
AAATTTTCAATTATTCTTTCAGTTGAAACACATTCTAACCAAACAAACAT
TAAAATCAGAAATATGTTTGAATGAGTAAATACACTATAAAAATTTAGCC
TGAAGGATTACTTTTAATGATAATTACATTTTCATTCTATATAATAGAGT
GATTAACATTCTTAAGGGTAATAATAGAATGATAAACATCATAGTTTAAA
ACATTTGTTAAAAAGTAATGATTAGCCTTTGGCATGTCTATTACTTCTCT
GATTTATTAAAAAAAATGAGTACTTTGTTTGAATGA
ATTGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAATAGCATATGAATCATCAGGAGAAAA
AAATGTTTATACATACTTCATTGTGGTTAACCTTCAAAAACCCTTTATAC
AAGAGAAGGAAGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAAAATGTA
TATGCATCCAATCTGTCACACCTTATCACTTCTCCCCCACCTTCTTCTCC
CTCCTCTTCCTCCTTTCTATACCCATTTTAAATATCCTCCCCCCCCCCCC
CTTTTTGCCCCCTACCTTCTCTTTTTTTTCTCCCCTTTTTCTCTCTTTCC
TCCCCCCTCCTTTTTCGTGATTTTTTCCGACCCCCCCCTCTGCTTTACTC
CTCTCCTCTCTTCTGCAATATCACCTCCCCCCCATTTTATATTAAAAACC
AACTCTCCTCCCCCTTTTCCCCCCCTCTCCCCCTCCCTCCCTTTCTTTTC
ATTCTTCCCCTCTCCTCTCTTTCCCCCTCCCCTCCCTCCCCCACTTATTT
ATTTCTCTTTTTCTTCCCTCTCCCCTCTCTTTTTTCCCCCCTCCTTTCCT
CTCTTTTACTTTTCCCCACCCCCCCTTCTCCTTTTTTCTCTTTTTTATCC
CCTCCCCTTCTTCCAACCTCCCTCCTCTCCTCCACCCACCCCCTTATTTT
TTTTTTCTTCTTTTTCTTTATACCCACTCCTCCCCTCTCCCTCTCCCTCT
TTTTTTCTCCTCTTCCCTTAACACCTCCTATCCCTCTTTATCTTTCTCCT
CCCTCTTCATTACCTTCCCCCTCCCCCCATTTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no170_m20.b1 MSMg01no170_m20.b1 CHROMAT_FILE:
MSMg01no170_m20.b1 PHD_FILE: MSMg01no170_m20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:40:51 2005
         (321 letters)



>mm_chr7_101242346_101243066
          Length = 721

 Score =  524 bits (271), Expect = e-153
 Identities = 300/317 (94%), Gaps = 14/317 (4%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattccaacagtaaaataagtagcagggagatactagtctgggagataaaattgagaa 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 ggaattccaacagtaaaataagtagcagggagatactagtctgggagataaaattgagaa 613

                                                                       
Query: 64  agggatgatgttggctacttaaatttagaaaacaacaattgggtagccatgctgatttca 123
           |||||||||||||| ||||||||||||||||||| || ||||||||||||||||||||||
Sbjct: 612 agggatgatgttgggtacttaaatttagaaaacagcagttgggtagccatgctgatttca 553

                                                                       
Query: 124 gggataaataaataaataaataaataaataaataaataaataaatgtaacaaaattttat 183
           |||            |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 ggg------------ataaataaataaataaataaataaataaatgtaacaaaattttat 505

                                                                       
Query: 184 caactaagcaggaggtctccatttttctgaacaaagtatcatggtttctgctctgtatcg 243
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 504 caactaagcaggaggtctccatttttctgaacaaagtatcatggtttctgctctgtat-g 446

                                                                       
Query: 244 g-catattctgaatttcttcagttatctgtactctgctactaaatgaagttaaaatagtg 302
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gtcatattctgaatttcttcagttatctgtactctgctactaaatgaagttaaaatagtg 386

                            
Query: 303 gagtactttgcaaattt 319
           |||||||||||||||||
Sbjct: 385 gagtactttgcaaattt 369


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 721
Length adjustment: 9
Effective length of query: 312
Effective length of database: 712
Effective search space:   222144
Effective search space used:   222144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)