Query= MSMg01no171_m07.b1 MSMg01no171_m07.b1 CHROMAT_FILE:
MSMg01no171_m07.b1 PHD_FILE: MSMg01no171_m07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:42:04 2005
(314 letters)
>mm_chr7_99894863_99895576
Length = 714
Score = 600 bits (310), Expect = e-176
Identities = 310/310 (100%)
Strand = Plus / Plus
Query: 5 gaattctctaatgtaccttaacccctttttttattgcacaggaaagtttaaaagtcaaaa 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctctaatgtaccttaacccctttttttattgcacaggaaagtttaaaagtcaaaa 264
Query: 65 ctctacagtgttatcattacttaggaaatcattgctgtattttcttggatgtagtagaaa 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ctctacagtgttatcattacttaggaaatcattgctgtattttcttggatgtagtagaaa 324
Query: 125 tgtggccagtctttaaatgaacatttccgagtgaagaggaattttatgtcacccatagat 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgtggccagtctttaaatgaacatttccgagtgaagaggaattttatgtcacccatagat 384
Query: 185 aatgcattctcaggttccttcccacaggagtctaacctttgaaaactagcagcctcaaca 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aatgcattctcaggttccttcccacaggagtctaacctttgaaaactagcagcctcaaca 444
Query: 245 ttagtctatcgtaaaggttcttgggattttatttttctttcaatgttgtagaccaacctg 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ttagtctatcgtaaaggttcttgggattttatttttctttcaatgttgtagaccaacctg 504
Query: 305 taacttagtg 314
||||||||||
Sbjct: 505 taacttagtg 514
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 714
Length adjustment: 9
Effective length of query: 305
Effective length of database: 705
Effective search space: 215025
Effective search space used: 215025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no171_m07.g1 MSMg01no171_m07.g1 CHROMAT_FILE:
MSMg01no171_m07.g1 PHD_FILE: MSMg01no171_m07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:42:04 2005
(285 letters)
>mm_chr7_99933296_99933983
Length = 688
Score = 478 bits (247), Expect = e-139
Identities = 272/285 (95%), Gaps = 9/285 (3%)
Strand = Plus / Minus
Query: 1 ctgattaaaaatctactttgctaacttctatttagaagacacggttctattctggagaca 60
|||||||||| ||| ||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 608 ctgattaaaagtctgctttgctaacttctatttagaagacacggttttattctggagaca 549
Query: 61 gggcacatgcctttaatctgagcacttgcaaggcagaggcaggcagatctctttgagttc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 gggcacatgcctttaatctgagcacttgcaaggcagaggcaggcagatctctttgagttc 489
Query: 121 aaggccagtctggtctacacagtgagactctaaaccctgcccaacatgccctaaaagaca 180
||||||||||||||||||||||| |||| ||||||||||||||||||||||||||
Sbjct: 488 aaggccagtctggtctacacagtaagac------ccctgcccaacatgccctaaaagaca 435
Query: 181 gggcttttgattttttactgaggtattttgttgttgttgttgtt---tctctctgtattt 237
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 434 gggcttttgattttttactgaggtattttgttgttgttgttgttgtttctctctgtattt 375
Query: 238 ttgcattttcataagtatgctttattttataattttaaaataaga 282
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 ttgcattttcataagtatgctttattttataattttaaaataaga 330
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 688
Length adjustment: 9
Effective length of query: 276
Effective length of database: 679
Effective search space: 187404
Effective search space used: 187404
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
