BAC Information

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BAC

Clone NameMSMg01-172D11
Chromosome7 (Build37)
Map Location 36,994,317 - 36,994,596
singlet/doubletsinglet
Overlap genenone
Upstream geneWdr88, Gpatch1, Rhpn2, C230052I12Rik, Ccdc123, Slc7a9, 2410004F06Rik, Nudt19, Rgs9bp, Ankrd27, Pdcd5, Dpy19l3, zfp507, LOC100043872, EG668988
Downstream geneLOC668507, Tshz3, LOC100043874
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-172D11.T7 (MSMg01no172_d11.b1)MSMg01-172D11.TJ (MSMg01no172_d11.g1)
ACCAG368203AG368204
length719705
length of high quality
(start - end)
---281 (70 - 350)
definitionCHROMAT_FILE: MSMg01no172_d11.b1 PHD_FILE: MSMg01no172_d11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:42:38 2005CHROMAT_FILE: MSMg01no172_d11.g1 PHD_FILE: MSMg01no172_d11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:42:38 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTTCCCCAGTGAGCTCATCACTCATGTATAGGGAGGCTACTAGTTTTG
CGTGTTAATTTTGTGTCCTGTCACTTTGCTGAAAGCGTTTATCTGGCCAA
GGAATTTTCTGAGTCTTTAGAGTCTCTCATAGAATTGCATTATCTTCCTT
TCCTATCTGTATCACATTTATTTTCCTCTCGTGCCTTATAGGTCTAGCTA
AGATTTTTAGTGCTATGATGAACAGGATTTGACAGGGTGTACCCCCAGGT
CTCGTTCCTGAATTGATTTTTTGGTTTCTGATTAGCTTGGGTTTTAAATC
TATTTTTTTAATCCNAACCAAGANCCGCTTGACTCTTACTTCCATTTGCA
TGAAAGACTCGCCACAAATATTAAAAAACTAGCGGAGTGTGTATCATTGA
CTCTTAGGAATGCCTTTTGGAGATAGCATAGCCAGGATTACTGGTATCTG
ATTAAATTGGTCACCAATGTCTTTTGACAACTCCGTTCCTTACATTTGAT
AGTTGGTGATGAAAAGCCATTGTTATATCCTTCCTTTCCATGGCGTTTCG
ATTGTCTCAGAGTGTTCCCTGTCTAGGTAACTACTTGAATGGTAGTTCTT
TTTTTTTTATACGCTTCTTCATGTCCCAACCTTCCTTATTTTATGCGATT
GTACATTGTCCCCCCCAAC
GAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXATCTCTGCTCACACGTGACTCTTTCCTGGAA
GATCAGGGCCCGTGCCGGAAGTTCCCTTGGAGCAGTGCGGAAGTTCCTGT
GGAGGTTTCTCTCTTTTGGAGTCTCCATTTTGGATCCTCCACCAATCCCA
TGCTCTTTAATGTTTTGCTAATTAGAAGGTGGGAACCACTTGTTGAGGAT
CACTTATTTCTTTACTGGTGGGCACTTTCAAGGAAGCTCCCATCACTCCC
TACTTGGGTGCGTTTCATGCTCTTATACAAAGCCTGAAGTTGTTCGGGTT
ATTATTCATGNCCAATTCCTTTGTAAATGTCTGAGCTATAGAGATCTTCC
CGACATCATAAAAACGAATCGTTGGGACATGACGTTCTGTGTGGCTTTGC
AGGTTAATCCTTCTACACCTACTTGAACCTTTCCCCAGGATGTTGAGTGT
GGGTCTTGGAGCTGTGGGCCCTGAGGGAGACTGGGCAAAGTGCTGCCTAA
TCTTTGGGTGCCAACAGAATGACACTAGGTTCCAGCCCCATGAACCTTGT
TCCTGGTAAAGCTCCTTAATTTTCAGTCCCTGTTTTCAAGATGTAACCTG
AGGGCTCCGCATGGATTTGTCTCTTTGACCGCACCTGGTTGGCTCTTTTT
TACCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no172_d11.g1 MSMg01no172_d11.g1 CHROMAT_FILE:
MSMg01no172_d11.g1 PHD_FILE: MSMg01no172_d11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:42:38 2005
         (281 letters)



>mm_chr7_36994117_36994800
          Length = 684

 Score =  495 bits (256), Expect = e-144
 Identities = 274/280 (97%), Gaps = 3/280 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   atctctgctcacacgtgactctttcctggaagatcagggcccgtgccggaagttcccttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 201 atctctgctcacacgtgactctttcctggaagatcagggcccgtgccggaaattcccttg 260

                                                                       
Query: 61  gag-cagtgcggaagttcctgtggaggtttctctcttttggagtctccattttggatcct 119
           ||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gagtcagtgcggaagttcctatggaggtttctctcttttggagtctccattttggatcct 320

                                                                       
Query: 120 ccaccaatcccatgctctttaatgttttgctaattagaaggtgggaaccacttgttgagg 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccaccaatcccatgctctttaatgttttgctaattagaaggtgggaaccacttgttgagg 380

                                                                       
Query: 180 atcacttatttctttactggtggg-cactttcaaggaagctcccatcactccctacttgg 238
           |||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||
Sbjct: 381 atcacttatttctttactggtgggtcactttcaaggaagctcccatcactccttacttgg 440

                                                   
Query: 239 gtgcgtttcatgctcttatacaaagcctg-aagttgttcg 277
           ||||||||||||||||||||||||||||| ||||||||||
Sbjct: 441 gtgcgtttcatgctcttatacaaagcctgtaagttgttcg 480


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 281
Length of database: 684
Length adjustment: 9
Effective length of query: 272
Effective length of database: 675
Effective search space:   183600
Effective search space used:   183600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)