BAC Information

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BAC

Clone NameMSMg01-172E09
Chromosome7 (Build37)
Map Location 76,274,238 - 76,274,468
singlet/doubletsinglet
Overlap genenone
Upstream geneIgf1r, C330024D12Rik, EG434197, LOC100041800, EG384639, Arrdc4
Downstream geneLOC384741, EG665410
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-172E09.T7 (MSMg01no172_e09.b1)MSMg01-172E09.TJ (MSMg01no172_e09.g1)
ACCAG368239AG368240
length809724
length of high quality
(start - end)
200 (45 - 244)231 (132 - 362)
definitionCHROMAT_FILE: MSMg01no172_e09.b1 PHD_FILE: MSMg01no172_e09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:42:42 2005CHROMAT_FILE: MSMg01no172_e09.g1 PHD_FILE: MSMg01no172_e09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:42:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTTATTATATTGGCCAACTACTCCTGGGCATAAAGCCTAAAGAGTG
GTTGGTATACACAGTGACATTCCATTGCAGTAAACTTAATTTCTCTTTTA
TTGTGGTTACCAATTGTATTTATGTGTAGGACTTTATGTCCATGTCCTCT
TTTCAGTGCTGAAATGTTGTTTGAACCTGTATGAGTCTTGCCCACACTGT
CACGATCTCTGAGAGTTCACGTGTACCTTACTTCTGCTAGTCTGCATGAT
GCTCTCCCCATTGAATTCTTTTATTGCTTTCTGCTTCTTAACAACCAAAC
AAACCCCCTTTTTCCTANTTTTCCCCCCCCCCCCCCCCCTTTTTAATATT
TTTTATAAAATTTTTTTCAATGTGGCGGCTCTCTTTCACAAAAAAAAAAA
AAAAAAACTCCCTTTTGTTTTTTTGAGGGGGTGTTTCTTCTTTCTCTTCC
TTTTTTTACTTACCAACTCCTCTCCTATTTCTCCCCTCTTTATTCCCCTA
TACACATTCTTTTACTATTCTCTTTGTATTTATATCCCTCTCTCACCTCA
CCCCATTTTCTTCCTCTTCATATCCTTCTCTATACTTTCTTATAATTATA
TATTCCCCCACCCACACTCTACTACCTTACATTTATACTTTATTCCCCTT
TTATCTATACTCTTTCTATTATTTTTTTATTTAACCCCCCTCTAATATCA
TATTATTTCTTCTCTAATTGCTCCCTTTTCTTCAGCTCTATTTATTTACC
TCCCTCGCN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTTGTTCTTTTTATTAAGTC
TAGGCTATTAGGTCTTTGTGAACCCCTAATGATATAGAATAGAAAATCAG
TCTGTTTACAGAGTACTAATGCTGAATTATGGGCAGATTTTCTTGGTTCT
TAAATATATAGGATTAAAAGTTGTATGATGACCTTCCAGGCATCTTAGGA
AAGAATTTCCCGTGTTACCTAATTACTAATCAAGTGCTCTTGAGAACTTA
TTTTGCTTCTAAATCTTTCAGGTTATTCATCTTTAAAATATACGGTCAAC
CATACGGTCCTTACTCNTTTCCATTCCANGCTCACTCTAGTAACCATTTC
TCAAGCAGCTAACGGAATCCCCTAAAATAAAGATTTGGATTTCCAGGATA
AATATTTAATCTCCATTTATTTTCCTGGGTTGTAAGTAATAATGAACCTT
AAACCAAAATAGCAGACTTAGCTTCTACCATAAACTAATAAGAATCCCAT
TAGATATGATCTTTTGGATTACTCTTATTTTACGACTTTAAATTTAATTC
TGACAAAATTTAACGCATATCTTCATATTATGTTAAGGGTATATGTCAAA
TCAATTACTAATTCACCCTCTTGAGTTTACCACTCCGTACTGCCGATTAT
TTTCTTTAGCAACCTTTTCACCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no172_e09.g1 MSMg01no172_e09.g1 CHROMAT_FILE:
MSMg01no172_e09.g1 PHD_FILE: MSMg01no172_e09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:42:42 2005
         (231 letters)



>mm_chr7_76274038_76274668
          Length = 631

 Score =  424 bits (219), Expect = e-123
 Identities = 228/231 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   atatagaatagaaaatcagtctgtttacagagtactaatgctgaattatgggcagatttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atatagaatagaaaatcagtctgtttacagagtactaatgctgaattatgggcagatttt 260

                                                                       
Query: 61  cttggttcttaaatatataggattaaaagttgtatgatgaccttccaggcatcttaggaa 120
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 261 cttggttcttaaatatataggattaaaagttgtatgatgaccttccagccatcttaggaa 320

                                                                       
Query: 121 agaatttcccgtgttacctaattactaatcaagtgctcttgagaacttattttgcttcta 180
           ||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 321 agaatttcctgtgttacctaattagtaatcaagtgctcttgagaacttattttgcttcta 380

                                                              
Query: 181 aatctttcaggttattcatctttaaaatatacggtcaaccatacggtcctt 231
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aatctttcaggttattcatctttaaaatatacggtcaaccatacggtcctt 431


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 231
Length of database: 631
Length adjustment: 9
Effective length of query: 222
Effective length of database: 622
Effective search space:   138084
Effective search space used:   138084
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)