BAC Information

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BAC

Clone NameMSMg01-172M04
Chromosome7 (Build37)
Map Location 93,949,628 - 93,949,936
singlet/doubletsinglet
Overlap geneEG546983
Upstream geneEG620928, EG546980, LOC666382, LOC637652, LOC637667, EG666418, LOC100039471, EG546981, Vmn2r-ps86, Vmn2r76, Olfr310, Olfr309, Olfr308, Olfr307, Olfr306-ps1, Olfr305, Olfr304, Olfr303, Olfr301, Olfr1531-ps1, Olfr300-ps1, Olfr299, Olfr298, Olfr297, Olfr296-ps1, Olfr295, Olfr294, Olfr293, Olfr292, Folh1
Downstream geneVmn2r-ps87, LOC637896, EG621430, LOC621477, Nox4, Tyr, Grm5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-172M04.T7 (MSMg01no172_m04.b1)MSMg01-172M04.TJ (MSMg01no172_m04.g1)
ACCAG368574AG368575
length717718
length of high quality
(start - end)
313 (45 - 357)234 (124 - 357)
definitionCHROMAT_FILE: MSMg01no172_m04.b1 PHD_FILE: MSMg01no172_m04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:43:18 2005CHROMAT_FILE: MSMg01no172_m04.g1 PHD_FILE: MSMg01no172_m04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:43:18 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCATTTATATCTAGATACTTTCTTTGGCAAACACAACATCTTTATGAC
AGTTGGGCAGGAGAGAAAGCATAATGTAAAAGGTTTTACCAAATACTTTG
TTTATCTCTACTTGTATAGCAATTCACAAGAAGTTGGATATGATTTTAAT
AATAATAAGAATCCACACTTTCTCACACTTCTAGCATGTGTTCTAGCACA
CTAAGATCTATGCATAGACTGAGCTCTATGCATTCCATTTCTCCATAATG
ATGCTTCTGGTCAATATCTTTCAGCTTTACTGTGGTTATTTTCATCTCCT
TCTAAGTGTTCTGTATCCCTTTCATNCCCTCTACCAGATGACTCCCAAGG
ACACATCTCTACCATTAAACATGAAGACCCTAGTAGTTCGCTTCAGATGT
AATTGGTTAGGAGTCATCATTACAGATGATGACCATGGAATTCAGTTCCT
TTCTGAACTGAGAACAGGACTGGAAAGAAACACTGTCTGCTTAGCATTTG
TCACTTCTAATACTTATGATTAGATGTTATACCCTAAAATGACTCATATA
TATTATCCCCATATCTTATTGTCATCAGCTAAAGTTGTCGTCGCCTATGG
GTATCAATATTCTTCTCTACTACTGAACTTCATGCTTTGGATATTTCACA
ACATTCCCAGATTCTGT
AATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAATAATCACATGCACAGAGATTTTTG
TAGGAAAAACAGCCATTATTTCCCTTACCATAGAACTTGAGAAGCTGTTG
GTCTTTTTAAGAGCAGCGTTTACAATCGGTTTCTATAAGGGCTTCTTCAG
CCACAATAGACTCCTAACTATAGGTGCAGAACTCCAAAGACCAATTGATA
CTGTCTATTTTTTTTTCTTTTTCTCTTTCACCAAATTATCTCCAGATAGT
TGGAGAGTACTGCATTTCTCATACCTGTTCTCTCATGTGTAAACTATCTC
TAGTCAAGGTTTTTTGTCACCCCCCCCCCCTACCTTCACTTCTCTAGATT
TTCACATAGTTCTAAACACATACACAAAAACACATAACAGAGAGGCTTTC
AGATTCAGACACACACGACCCTTTCTCATCCTCCCCAAACAGGCAAAAGA
ATTAGAGGACTTCTGAGAGGGAAGTTCCCACTGCTAGAACTGAACTCAGT
CCCCGTGCCTGATTTCCTGAGAGTACCAGGCTTCCCTGGCTCTCCCCACT
TCCCAGGGCATACCTCAGGGCAGTCGCCTGTGTTCTTCCTAATAAGCCTG
TTGACCACAGTCTTCTAGTTCCCACCGCCTGAGAGGACCGCTGAAAAATC
CCCGTGTGTTTCTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no172_m04.b1 MSMg01no172_m04.b1 CHROMAT_FILE:
MSMg01no172_m04.b1 PHD_FILE: MSMg01no172_m04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:43:18 2005
         (313 letters)



>mm_chr7_93949424_93950136
          Length = 713

 Score =  590 bits (305), Expect = e-173
 Identities = 308/309 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcatttatatctagatactttctttggcaaacacaacatctttatgacagttgggc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatttatatctagatactttctttggcaaacacaacatctttatgacagttgggc 264

                                                                       
Query: 65  aggagagaaagcataatgtaaaaggttttaccaaatactttgtttatctctacttgtata 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aggagagaaagcataatgtaaaaggttttaccaaatactttgtttatctctacttgtata 324

                                                                       
Query: 125 gcaattcacaagaagttggatatgattttaataataataagaatccacactttctcacac 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gcaattcacaagaagttggatatgattttaataataataagaatccacactttctcacac 384

                                                                       
Query: 185 ttctagcatgtgttctagcacactaagatctatgcatagactgagctctatgcattccat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttctagcatgtgttctagcacactaagatctatgcatagactgagctctatgcattccat 444

                                                                       
Query: 245 ttctccataatgatgcttctggtcaatatctttcagctttactgtggttattttcatctc 304
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ttcttcataatgatgcttctggtcaatatctttcagctttactgtggttattttcatctc 504

                    
Query: 305 cttctaagt 313
           |||||||||
Sbjct: 505 cttctaagt 513


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 713
Length adjustment: 9
Effective length of query: 304
Effective length of database: 704
Effective search space:   214016
Effective search space used:   214016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)