BAC Information

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BAC

Clone NameMSMg01-173E20
Chromosome7 (Build37)
Map Location 114,591,079 - 114,591,312
singlet/doubletsinglet
Overlap geneSyt9
Upstream geneEG668139, Gm1966, LOC100042141, Olfr693, Olfr694, Olfr695, Olfr696-ps1, Olfr697, Olfr698, Olfr699, Olfr700, Olfr701, Olfr702, Olfr703, Olfr704, Olfr705, Olfr706, Olfr707, Olfr708, Olfr709-ps1, Olfr710, LOC384651, Olfr6, Olfr711, GA_x5J8B7W6B6J-1784824-1783474, Olfr2, Olfr713, Olfr714, Olfr17, Olfr715, Olfr716, Nlrp14, LOC100042278, 1700012H05Rik
Downstream geneOlfml1, Ppfibp2, 5330417H12Rik, Cyb5r2, Ovch2, LOC100042310, Olfr467, Olfr468-ps1, Olfr469, GA_x5J8B7W6B6J-2580381-2580079, Olfr470, Olfr471, LOC626661, Olfr472, Olfr473, LOC669301, Olfr474, Olfr476, Olfr477, LOC626732, Olfr478, Olfr479, Olfr480, Olfr481, LOC100043059, Olfr482, Olfr483, Olfr484, Olfr485, Olfr486, Olfr487, Olfr1538-ps1, Olfr488, LOC546990, Olfr489-ps1, Olfr490, LOC626881, Olfr491, Olfr492, Olfr493, Olfr494, Olfr495, Olfr496-ps1, Olfr497
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-173E20.T7 (MSMg01no173_e20.b1)MSMg01-173E20.TJ (MSMg01no173_e20.g1)
ACCAG368944AG368945
length722764
length of high quality
(start - end)
533 (47 - 579)234 (129 - 362)
definitionCHROMAT_FILE: MSMg01no173_e20.b1 PHD_FILE: MSMg01no173_e20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:43:57 2005CHROMAT_FILE: MSMg01no173_e20.g1 PHD_FILE: MSMg01no173_e20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:43:57 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCGCGG
AATTCCTTTACTATCCCGAGACTATCCATAAGTTCTGTGACTCTAGAGAA
CCCTGACTAATACACATGTGAATTCTACAGTTTCCTATTCATTCATATAT
GTATATAATGAATATATGAATGAATAGATATATATTAGGCTCTTTTCTAC
AGTGAAATGATTTAGGTAGGCTAACACTTCTGTTATCTCATATTTTTACC
TTTTTTGTGTGTAAGAACATCTAAAATCTCTTTTAGCTAATTGCAGGATG
CAGTCTTCTCTCTACAGTTCATCCTACTGCTCCTGCTGTAAGCTAACTAG
ATTTATCCTGCACAATTAAGGAAAGATGGACCATGAGCTCGTGGCCAGGA
GAAACAGCAAGTAAGATTTATACCCTTTGACCTACGTCTTCCAAAGCCCC
TCCCCCACCTCTGCTAACAACTTTTGTGGGTTTTCTATTTTGCATTTTTT
AGTTTCCCCATATGAGAATGCAATATTTTTTTCTGTCTGTCTTACTTCAT
CTAACATAAACTCCATGCTTTTCCACTGTATACGAATTCAGGATTTCCTT
CTTTTTGATATCTTATTACATGCATAAGCAATACTGTCTCTGTTCATTTA
TTGATGAATAATTGAGTTGCTACAATGTTTTGGTTATTGTGAATAGTGCC
ATACACAATGGAGTGCAGCTAT
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGCAGGAAGAACGCCAGATCCTGC
AGGTGCTACTGTAAGCTGGTTGACCCCTTAAGAACTGTCTTTTACCATTC
CTAGGTACATACACTGGACAAGTCCTTGTTCCTACTTAATAGTAGATATA
TACAAGGATTATGATGGCAATAATTTCTGAAGTAGAAGAAGCTTAGTAAT
TCAAATGGGTAAATTATGGTGTGTTGTATGACAGATGCTAAAATATCACT
ATAGAAAATAAAAGCTGTGCATGAGGCATATGCCTGCAAGCCCAACATGG
GGGCTGGGGGTGTTTTATTTTGACCCCCCCCCCCCCCCNANAATNTTAAT
AAAAGTTTTTTTTTGTTCTCCCCCCAAAAAAAAAAAAAAACCAGGGGGTG
GGCGGGGGCCTCCCGATCTCTTGAATACTACAAGGATACCTTAATCCAAA
TTACTTTTTTCTCTTTCACTAACCAGCCTATTTTCGTTTTCCTCATACGT
CTACTTGTCCCTTTTTCCCCCTATCTGTCTTTCCCCCCCCACCCTTTTTC
TTCTTTTTTTTTTCCCCTCCTTTTTATAACCTTTTATTCTTTTTGATCTT
TATATCCCCGTAATATTTGTCCCCAACGTTTTCCCCTTTATTTTCCTTCA
CTCCTACCTCCCTCTCCTTTCTCCTTTTGCCTATTTTCACTTTTTTTCTT
TTCTTTCTCTTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no173_e20.g1 MSMg01no173_e20.g1 CHROMAT_FILE:
MSMg01no173_e20.g1 PHD_FILE: MSMg01no173_e20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:43:57 2005
         (234 letters)



>mm_chr7_114590879_114591512
          Length = 634

 Score =  431 bits (223), Expect = e-125
 Identities = 232/235 (98%), Gaps = 2/235 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   taagaactgtcttttaccattcctaggtacatacactggacaagtccttgttcctactta 60
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 taagaactgtctttgaccattcctaggtacatacactggacaagtccttgttcctactta 375

                                                                       
Query: 61  atagtagatatatacaaggattatgatggcaataatttctgaagtagaagaagcttagta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 atagtagatatatacaaggattatgatggcaataatttctgaagtagaagaagcttagta 315

                                                                       
Query: 121 attcaaatgggtaaattatggtgtgttgtatgacagatgctaaaatatcactatagaaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 attcaaatgggtaaattatggtgtgttgtatgacagatgctaaaatatcactatagaaaa 255

                                                                  
Query: 181 taaaagctgtgcatgaggc-atatgcctgcaagcccaacatgggggctgggggtg 234
           ||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct: 254 taaaagctgtgcatgaggcta-atgcctgcaagcccaacatgggggctgggggtg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 634
Length adjustment: 9
Effective length of query: 225
Effective length of database: 625
Effective search space:   140625
Effective search space used:   140625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)