BAC Information

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BAC

Clone NameMSMg01-173N09
Chromosome7 (Build37)
Map Location 101,883,839 - 101,884,148
singlet/doubletsinglet
Overlap genenone
Upstream geneEG638305, EG545982, EG666816
Downstream geneLOC100040132, LOC666823
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-173N09.T7 (MSMg01no173_n09.b1)MSMg01-173N09.TJ (MSMg01no173_n09.g1)
ACCAG369325AG369326
length722712
length of high quality
(start - end)
314 (46 - 359)229 (112 - 340)
definitionCHROMAT_FILE: MSMg01no173_n09.b1 PHD_FILE: MSMg01no173_n09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:44:34 2005CHROMAT_FILE: MSMg01no173_n09.g1 PHD_FILE: MSMg01no173_n09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:44:35 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTGCCTAGGCCTCATACAGGCTAATTAATTTGTCTAAGCTTTGGA
TTTGCTTTTTTATAATCTAGAAAGGTGTGAGATGGCAAGAGAATAAGGCA
CTGCTTTTTATGGCAAAGATTTCTTTGACCTTTCTTGAGCCTACTCTTTT
TTATCTGTGGAATTCTAAGAATAGAAAGAATTATATCTGGACTTCTATAA
GATCTAGAAATGTAATATGTACGATGGACAGTTTAGATGTTTGATTGTTG
AGCCCAAAGTAGATACATTATAGTTGTTGTTTTATATTAAAATACTTCGT
ATCAGTGGCTTTTGTTTATTTCCAAACGTCGCCACACGGGCAATGCCTTT
GTAATAACATTGTGGCTACACATCTCATCATCCCGTTTAAATCACTTAGG
ATGATGTGATGGTGAAATTATTAGAAGCCGCTTCAATAATGGTAGCTTTC
ATAGCCCAAAGGGTTGGCTTACACAAATGCAGGAAAATCCATTAAGTCTA
TATTGTGGCTGTGTTTTACAATCAGATCTCCAAATGACTACATTTAATGA
ATTTTCAGTAGTAAATACATATTTGAGAATGTATAATGAGAATTTTAACA
TTTTCCCTATTTTATAGAATTTGTGTTTCCACCGTTCAAAGGTAAAGACA
GATAACTTCCCAGTTCTATTTT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXAAGAGTTGCCTCCATCATTTGGAAATTGACATGGCAGTAATTT
TTCCCTCAGAGACATCAGCAAACTCTAAGTAATACTATGATTTATGATTT
TGCTGATTGTAGATTTAAAGGAGTAGGGAAGAAAATGTTAATAAAGCAAA
ATAAATTTGAAACTGTCAGGAGTGGAACCTTTACATCATGAATAACACAA
ATAAATGAAGGAAATATTTTTCCAGGATTTGAAATTTGTTAATAAATTAT
CTCATAAGTCACTCGCTTTTACTGACCAATGAGCGAAATCTCTTTTTATC
TCCCCCCTCCCCCCCCTCCTGTCTTGCTTATTAACATAACCTAAGCATCA
CATAAAATTGATACTGGAGCTACGGTCTCTTGTCATTTGGTACTGTTGGA
TGTCTGTATAACTGAGAAAATATTGGAAATTGTCATGTCAAAAAGTTTTA
AAGTGTCATGTATAATATCAACGGCAGCTGACTGAAATTTGCAGTCCAAG
TATTATTTATTAAGCTAGCCATAATTTTCGCATTACGCATGTTTTATAAT
TGTCCAGCTTGTTTTACCACCATGCAACATTTTTCCTTGTACCCCATGTC
TATTTGCCTATATAACATGCAAATTTATCACCTAGACTTTTATTTTCCCC
ATTTTGACCTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no173_n09.b1 MSMg01no173_n09.b1 CHROMAT_FILE:
MSMg01no173_n09.b1 PHD_FILE: MSMg01no173_n09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:44:34 2005
         (314 letters)



>mm_chr7_101883635_101884348
          Length = 714

 Score =  592 bits (306), Expect = e-173
 Identities = 309/310 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttgcctaggcctcatacaggctaattaatttgtctaagctttggatttgctttt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttgcctaggcctcatacaggctaattaatttgtctaagctttggatttgctttt 264

                                                                       
Query: 65  ttataatctagaaaggtgtgagatggcaagagaataaggcactgctttttatggcaaaga 124
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 265 ttataatctagaaaggtgtgagatggtaagagaataaggcactgctttttatggcaaaga 324

                                                                       
Query: 125 tttctttgacctttcttgagcctactcttttttatctgtggaattctaagaatagaaaga 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tttctttgacctttcttgagcctactcttttttatctgtggaattctaagaatagaaaga 384

                                                                       
Query: 185 attatatctggacttctataagatctagaaatgtaatatgtacgatggacagtttagatg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 attatatctggacttctataagatctagaaatgtaatatgtacgatggacagtttagatg 444

                                                                       
Query: 245 tttgattgttgagcccaaagtagatacattatagttgttgttttatattaaaatacttcg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tttgattgttgagcccaaagtagatacattatagttgttgttttatattaaaatacttcg 504

                     
Query: 305 tatcagtggc 314
           ||||||||||
Sbjct: 505 tatcagtggc 514


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 714
Length adjustment: 9
Effective length of query: 305
Effective length of database: 705
Effective search space:   215025
Effective search space used:   215025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)