Query= MSMg01no174_g01.b1 MSMg01no174_g01.b1 CHROMAT_FILE:
MSMg01no174_g01.b1 PHD_FILE: MSMg01no174_g01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:45:14 2005
(317 letters)
>mm_chr7_120463603_120464319
Length = 717
Score = 553 bits (286), Expect = e-162
Identities = 302/312 (96%), Gaps = 9/312 (2%)
Strand = Plus / Plus
Query: 5 gaattcatttgccaagctaaaaaaaaaaaaaaaaaaaagtgtacttgctgtcttctaaga 64
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 214 gaattcatttgccaagctaaaaaaaaaaaaaaaaaa--gtgtacttgctgtcttctaaga 271
Query: 65 atctaggggctatggtcatagattgctgattcatggagtggtcagaaggagcctggagta 124
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 atttaggggctatggtcatagattgctgattcatggagtggtcagaaggagcctggagta 331
Query: 125 aatgaccaaattgcaaattgatatgtaaatagaagactggaattttagtaggcatgagat 184
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 aatgaccaaattg-------atatgtaaatagaagactggaattttagtaggcatgagat 384
Query: 185 aagctagtgatggcaattcgtttgttttaatttttttttttttcctagcaagagctgagc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aagctagtgatggcaattcgtttgttttaatttttttttttttcctagcaagagctgagc 444
Query: 245 tatctatctgtagctctctgggagagcaaacacggcttgtttacaatgttttctaacagg 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tatctatctgtagctctctgggagagcaaacacggcttgtttacaatgttttctaacagg 504
Query: 305 atttcttatttt 316
||||||||||||
Sbjct: 505 atttcttatttt 516
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 717
Length adjustment: 9
Effective length of query: 308
Effective length of database: 708
Effective search space: 218064
Effective search space used: 218064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no174_g01.g1 MSMg01no174_g01.g1 CHROMAT_FILE:
MSMg01no174_g01.g1 PHD_FILE: MSMg01no174_g01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:45:14 2005
(524 letters)
>mm_chr7_120498000_120498923
Length = 924
Score = 704 bits (364), Expect = 0.0
Identities = 379/384 (98%), Gaps = 1/384 (0%)
Strand = Plus / Minus
Query: 116 cactgcgatttgattttgagatatttttctagttttaaataggcttaatttttaaaaaaa 175
|||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||
Sbjct: 924 cactgcgatttgattttgagatttttttctagttttaaataggcttaattttt-taaaaa 866
Query: 176 aatttatgtgtatgaatgttttgcctgcatgcatgtctgtgtaacacttgggtgcctggt 235
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 865 aatttatgtgtatgaatgttttgcctgcatgcatgtttgtgtaacacttgggtgcctggt 806
Query: 236 gacatggaagctagaaaaggacattgattccctggaactgaagttatagatgcttgtaat 295
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 gacatggaagctagaaaaggacattgattccctggaactgaagttatagatgcttgtaat 746
Query: 296 ccattggtgacaggttggtgctggaatctaaccagtgttcttaaccactgagccattctc 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 ccattggtgacaggttggtgctggaatctaaccagtgttcttaaccactgagccattctc 686
Query: 356 cagcccgttttaaacaggctcttaaaaatagtctttccaggtttaaattgttgctttcta 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 cagcccgttttaaacaggctcttaaaaatagtctttccaggtttaaattgttgctttcta 626
Query: 416 taaagaagcttacccaactacatttattaaacaaattagtttttgttctttggatttctg 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 taaagaagcttacccaactacatttattaaacaaattagtttttgttctttggatttctg 566
Query: 476 tttggtgtgtgtgtgtgtgtgtgt 499
||||| ||||||||||||||||||
Sbjct: 565 tttggggtgtgtgtgtgtgtgtgt 542
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 524
Length of database: 924
Length adjustment: 10
Effective length of query: 514
Effective length of database: 914
Effective search space: 469796
Effective search space used: 469796
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
