BAC Information

Click to search

BAC

Clone NameMSMg01-174H20
Chromosome7 (Build37)
Map Location 122,090,227 - 122,090,541
singlet/doubletsinglet
Overlap genenone
Upstream geneSpon1, Rras2, LOC668451, Copb1, Psma1, 4933406I18Rik, Pde3b, Cyp2r1, Calca, LOC100043295, Calcb, Insc, EG627967
Downstream geneLOC668472, Sox6, LOC100042779
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-174H20.T7 (MSMg01no174_h20.b1)MSMg01-174H20.TJ (MSMg01no174_h20.g1)
ACCAG369774AG369775
length752813
length of high quality
(start - end)
323 (41 - 363)215 (70 - 284)
definitionCHROMAT_FILE: MSMg01no174_h20.b1 PHD_FILE: MSMg01no174_h20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:45:22 2005CHROMAT_FILE: MSMg01no174_h20.g1 PHD_FILE: MSMg01no174_h20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:45:22 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TTCATACCCTGTATAAGGCTCTGAGCTCCAAATGCCTCTTCACCTGGCCC
ATCTGCTCATTGCTGGCCTCTGATACAGATTTCCAGGTACATTCATACAT
ACTCACTCGTATTCAGCTGGCCAGTTGTTAGACAACCAAGTCTTTTATTA
TTGTTTTCAAAAATCTTGTTAATTAATTAATTAGTTTACTTATTGTTGTT
TTATAAAAGGTCTTTCCATGTAGCCCAGACTGGCCTTAAACTCACATTCC
TCCTATCTCCGTCTCTTGTGCACCAGGATTGCATGTGAATACCACCAAGA
CCAACTTTGTTATTTTTGCCCCCGCCCCGCCTGTTTGTTTGTTTGTTTGT
TTGTTTGTTATACCCCCCACCAAAAAAAAAAAAAATGCTCCTTGGGGGGG
GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTGTTTCATGTCTTCCACAGTCTTTCTCTTT
CAATCCAAGGTATCTTTTTGCTTTCACTTTCTTTCTGTCTTTCTATGTGC
ATCTCATTTTATGCCGTCCCAAAATGTATTTCGCTTCTTGACCTCCTGAC
TTTTTCCCCCCCATATTTTCCCACCCCCTGCTTCTCTTTTTTGCCCCTCA
CCTCTTTTTTTCTTCATTCTCTGTCCCATTCCCCTATTTTGTATACCCTT
CT
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTCATTTGTTTTGAGTTTTCCTGTAGGTCTTA
GATACCTAGGTAGCCAGAATCATGAAGGAGATAGTTAGCAGTCTTAGGAG
CTGGGTGTGGTGGTGCATGCCTGGCATTGCAGCTCTTGGGAGGCTTGCTC
AGGAAGATTTTTAAGATTGAAGCTGGTGTGTTCTCAGCCAGAAGTATGGA
AGGAGAAGAAGGAAGGGGAGGGAGGGAGGGAGGCTAGCACAGTATTTCTC
TCCCTTCTCCCTTTCTTTTTTTTTTTCTTTTCCCTTCTTCGTTCTCTCTT
CTTTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCCCAAAGTTATGATTTG
TTATTTCGTTGTTTTTTTGCCCCCCCCCCAAAAAAAAAAATACTCTCTCG
GTGGGGGGGGTTTACTTCTTTCCTTTTTCCTTTCTTATCTCTTTTTCTTC
TTTCCTTTCCTTTTCCTATCCCTTTCTCTTTTTCTCCCCTTCCCCCCCCT
TCCCTTATTTTCCTCTGCATTTTCCTTGTCCCTCTCCTTCCCTTTTTCCC
TTCTTTATCTCCTCATCCGCCTATCCCCTCACCTTCCCCTTTTTCTCTCT
TATTCCCCTTTCTCACCCATTTCTCTTTTTTTTAAGTCCCCTTTGCCTTG
TTTCTTCTTCTACCCTTTTTCCCCTTTTTCCTTCTCCCCTTCCTTTCTTT
TTTTTCCTTCTCCCCTTTTTCATTTTATCCTCCTTTTCCCGCTATTTTTC
CCCTCCTTTTTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no174_h20.b1 MSMg01no174_h20.b1 CHROMAT_FILE:
MSMg01no174_h20.b1 PHD_FILE: MSMg01no174_h20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:45:22 2005
         (323 letters)



>mm_chr7_122090140_122090862
          Length = 723

 Score =  594 bits (307), Expect = e-174
 Identities = 313/315 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttcataccctgtataaggctctgagctccaaatgcctcttcacctggcccatct 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 gaattcttcataccctgtataaggctctgagctccaaatgcctcttcacctggcccatct 343

                                                                       
Query: 65  gctcattgctggcctctgatacagatttccaggtacattcatacatactcactcgtattc 124
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 342 gctcattgctggcctctgatacagatttccaggtacattcatacatactcactcatattc 283

                                                                       
Query: 125 agctggccagttgttagacaaccaagtcttttattattgttttcaaaaatcttgttaatt 184
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 282 agctggccagttgttagacaaccaagtcttttattattgttttcataaatcttgttaatt 223

                                                                       
Query: 185 aattaattagtttacttattgttgttttataaaaggtctttccatgtagcccagactggc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 aattaattagtttacttattgttgttttataaaaggtctttccatgtagcccagactggc 163

                                                                       
Query: 245 cttaaactcacattcctcctatctccgtctcttgtgcaccaggattgcatgtgaatacca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162 cttaaactcacattcctcctatctccgtctcttgtgcaccaggattgcatgtgaatacca 103

                          
Query: 305 ccaagaccaactttg 319
           |||||||||||||||
Sbjct: 102 ccaagaccaactttg 88


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 723
Length adjustment: 9
Effective length of query: 314
Effective length of database: 714
Effective search space:   224196
Effective search space used:   224196
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)