BAC Information

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BAC

Clone NameMSMg01-174K14
Chromosome7 (Build37)
Map Location 81,933,529 - 81,933,816
singlet/doubletsinglet
Overlap genenone
Upstream geneSt8sia2, LOC100042127, LOC100042140, LOC546979, Slco3a1, EG665308, EG665641
Downstream gene0610006L08Rik, Sv2b, 1500012K07Rik, LOC100042171, Akap13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-174K14.T7 (MSMg01no174_k14.b1)MSMg01-174K14.TJ (MSMg01no174_k14.g1)
ACCAG369893AG369894
length731723
length of high quality
(start - end)
238 (46 - 283)288 (74 - 361)
definitionCHROMAT_FILE: MSMg01no174_k14.b1 PHD_FILE: MSMg01no174_k14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:45:35 2005CHROMAT_FILE: MSMg01no174_k14.g1 PHD_FILE: MSMg01no174_k14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:45:35 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTGTTCAGTTCTGAGCCCCATTTTTTAATGGGGTTATTTGATTT
TCTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCC
TATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTT
TTTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCAT
TAGGTCCCATTTGTCAATTCTCGATCTTACAGTACAAGCTATTGCTGTTC
TGTTCAGGAATTTTTCCCCTGTGCCCATATCTTCTCGGCTTTTCCCCACT
TTCTCCTCTATTTGTTTCAGCGCCCCCGCCCCCATGCGAAGATCCTTGAT
CCACTTAGATTTGACCTTACTACCACTAGATAACTATACTTCTATTTCCA
CTCTTCTACCCTATTTTCACCTGCCGTGCCTGCATCCCTTGCTGACAATG
CTGTCTTTCTTCCTTTGGACCGTTTTATTTCCCTTGTTTTACATCTTTCG
CTCCTTTGTGTGTGCTCTCTTTTCTGTTCTTTTTACTTCCCCCTTTCGCT
CTTTTCGCTCCTTTCTTCCCCTTTTACGCCTGTCTTTTTCCCCCCCTTTT
CCCCCCGCTTTTTTTTTTCTTCCTCTGCTTTTTTCCCCTTTTTCCCTTTT
AACCCCCTTTTTTTCCCCCCCTTTTCCTTTT
TCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTTACCAATTAGTTCTTCGGATGAACT
TCCAAGAGCTGAGTCAGCCCTGTTCTTGGCAAAGGTTGAAATACAACTCT
TAACAATTTATGTGTGGTAGCAGTTGGAAATGAAACAGAAGGGCTGAGCA
GCAGTTGTTTGGTTTCATGTTCAAAGCATAACCTCCTTGGTAAGTTCCAA
GTGTGACTTGAAATTCTCTCATGTCCAGTATGGACAGAATTGAGACATAA
CAATGATATTGAAATTACTAAGGTTGATTAAAATTATATGCTGTTATTAT
ATCTTCTCAGTTATGTTTACCACCCCCCCCCAGCTTCTCTCATTTGTATG
ACAGGGTTAAGAATGCCACCTACCTAATAGACATGTCATCAGAGTCTGTC
ATATACTTCATAGTCACAGGTTACTTATTAAGATTGCCAGCTATTAATAC
AACAAGGCTGTCTCATAAGTCATACCAGAATGTAGTGGATCCCAAAGACA
TACATATTACCATGCTTTAAATCTTTCAGGTTGTTTTTATTGCTGCAGGC
TTGATGGGCAGCTTTGCTTTAAGATGTCACTGACCTGCGCTTAGCTCCAA
GCTTCCAGGGCATTAGAGCTATTTCTAATCGCCTATTTTAGGAACATACA
GTATACAAGGTATTACAACTATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no174_k14.g1 MSMg01no174_k14.g1 CHROMAT_FILE:
MSMg01no174_k14.g1 PHD_FILE: MSMg01no174_k14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:45:35 2005
         (288 letters)



>mm_chr7_81933329_81934016
          Length = 688

 Score =  557 bits (288), Expect = e-163
 Identities = 288/288 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttaccaattagttcttcggatgaacttccaagagctgagtcagccctgttcttggcaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 tttaccaattagttcttcggatgaacttccaagagctgagtcagccctgttcttggcaaa 429

                                                                       
Query: 61  ggttgaaatacaactcttaacaatttatgtgtggtagcagttggaaatgaaacagaaggg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 ggttgaaatacaactcttaacaatttatgtgtggtagcagttggaaatgaaacagaaggg 369

                                                                       
Query: 121 ctgagcagcagttgtttggtttcatgttcaaagcataacctccttggtaagttccaagtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ctgagcagcagttgtttggtttcatgttcaaagcataacctccttggtaagttccaagtg 309

                                                                       
Query: 181 tgacttgaaattctctcatgtccagtatggacagaattgagacataacaatgatattgaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 tgacttgaaattctctcatgtccagtatggacagaattgagacataacaatgatattgaa 249

                                                           
Query: 241 attactaaggttgattaaaattatatgctgttattatatcttctcagt 288
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 attactaaggttgattaaaattatatgctgttattatatcttctcagt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space:   189441
Effective search space used:   189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)