BAC Information

Click to search

BAC

Clone NameMSMg01-175A14
Chromosome7 (Build37)
Map Location 136,792,963 - 136,793,135
singlet/doubletsinglet
Overlap genenone
Upstream geneInpp5f, LOC100043651, 1110007A13Rik, Sec23ip, LOC210714, LOC100043144, Ppapdc1a, Brwd2
Downstream geneLOC100043150, Fgfr2, LOC546005, Ate1, LOC100043163, Nsmce4a, Tacc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-175A14.T7 (MSMg01no175_a14.b1)MSMg01-175A14.TJ (MSMg01no175_a14.g1)
ACCAG370153AG370154
length682722
length of high quality
(start - end)
176 (65 - 240)281 (72 - 352)
definitionCHROMAT_FILE: MSMg01no175_a14.b1 PHD_FILE: MSMg01no175_a14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:46:01 2005CHROMAT_FILE: MSMg01no175_a14.g1 PHD_FILE: MSMg01no175_a14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:46:02 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTCTCTTACTNNNNGGTATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXCGCGGAATTCCTGAGGCCCACATGGGAGCTCACAGT
TGCCCTTCATACATCCCACAGTCCTCCCATGCCCCTAAGCTCCCACAAAA
AGGAGCCTTGCCCCCAAGGCACTGGCCTACTTCACTCCTATGAGAGACAG
TGAACTTAGAAAGGGGTAGCATTAGGAGTTCTGTGCCCTGTCTTGAGCCT
GCTACCAGCATGTGACTACAGGCCACATTTTCCCACCAGGCCTTTCTCCG
TAGGCAGAGGGAATTATGGGGTTGATTTTAAAATTCTTAAAAAATTTTGG
GGGAAACCTTTCCCACCTCAAAAAATTTTTTTTTTTTCCCCCCCCCCCCC
CCCCCATTATTTGGGTCCGGTTGGATAAAGGGTCCTGGGAGCCCCCCCAA
AAAAAAAAAAAAAAAAGTTTCTCCCCACAAAGAAAAAAAGAGTCCCCCCT
TCTCGGGGGGGAGGTTGAAAAAAACCCCCGGTGAGAGAGTATTTTTTTTC
CCCCCCCCCTGGATTCCAACCACCCTGTTTTTGCGAAAACACAAAAAAAT
AAACAACTCCTCCCCGCTTGGTCTCCCTAAAAAAAACACGCCTTTCCCTT
TTTGATTATTTGGCTCCCCCCCCACCTTTTTC
TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTATCCCAGGTGGTTCCCGTTAGAACTTCT
GTGTTTGCATTCCTCTGTTTTATGTAAGATTCCAGTAACCTCTTTGTACC
TTGTGGGTATGTCACCCAACTTCCTTATTGTCTTCTGCATAAAAAGTCTG
ATGCTCAATTTGACAAAATACATTCAGATTCTACACAACCTCTCCTGTGT
GCATCTGTCTGTCATTCATCCGACGCTTTGCCCACCCGCGACTAGAGACC
CGTTCCACACAGATTAAGGGGCCCAAAGGGTCTGTGACAAGACTGGTCTA
TTACCTCAATTGCCATAACCAACCTACTTAATAAATTATCTTTCTAATAT
GTATATACCGCCCCCATACAAAAACTTTAAAGAACTGCCCTTCCTTCACA
CACACACACACACACACACACACATTTACACCCGCCCCAACTGACTAATG
CAGAAGTGCATGTAATTAAGCTAGCTCTCAAAGGAAGGGAGGCTGCAAAT
AATTTCAAAAACAATTCTGTTTGATAGTGAAAAGAAGGAAACCAAGAGAG
TCTTGGCGTGGAGCAAACTATTTTCCCAGAGTAACAGGCAAATTGTGAGA
GTCTGTCTGATATACATAGCAATTTTTAATCTTACCTAAAAATGTAAAAC
TGGCAGGTGCCCCCATGCAAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no175_a14.b1 MSMg01no175_a14.b1 CHROMAT_FILE:
MSMg01no175_a14.b1 PHD_FILE: MSMg01no175_a14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:46:01 2005
         (176 letters)



>mm_chr7_136792760_136793335
          Length = 576

 Score =  327 bits (169), Expect = 3e-94
 Identities = 172/173 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcctgaggcccacatgggagctcacagttgcccttcatacatcccacagtcctcc 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 ggaattcctgaggcccacatgggagctcacagttgcccttcatacatcccacagtcctcc 317

                                                                       
Query: 64  catgcccctaagctcccacaaaaaggagccttgcccccaaggcactggcctacttcactc 123
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 catgcccctaagttcccacaaaaaggagccttgcccccaaggcactggcctacttcactc 257

                                                                
Query: 124 ctatgagagacagtgaacttagaaaggggtagcattaggagttctgtgccctg 176
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 ctatgagagacagtgaacttagaaaggggtagcattaggagttctgtgccctg 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 176
Length of database: 576
Length adjustment: 8
Effective length of query: 168
Effective length of database: 568
Effective search space:    95424
Effective search space used:    95424
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)