BAC Information

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BAC

Clone NameMSMg01-175F03
Chromosome7 (Build37)
Map Location 139,427,167 - 139,427,331
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043173, Cuzd1, 1700007K09Rik, 1700063I17Rik, 2310057M21Rik, Pstk, Ikzf5, Acadsb, Hmx3, Hmx2, Bub3, LOC677073, LOC100043679, Gpr26, Cpxm2
Downstream gene4631426J05Rik, LOC100043682, LOC100043683, Oat, Nkx1-2, 2310007H09Rik, A930008G19Rik, 2010208K18Rik, C430003P19Rik, Zranb1, Ctbp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-175F03.T7 (MSMg01no175_f03.b1)MSMg01-175F03.TJ (MSMg01no175_f03.g1)
ACCAG370346AG370347
length741721
length of high quality
(start - end)
210 (130 - 339)165 (73 - 237)
definitionCHROMAT_FILE: MSMg01no175_f03.b1 PHD_FILE: MSMg01no175_f03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:46:22 2005CHROMAT_FILE: MSMg01no175_f03.g1 PHD_FILE: MSMg01no175_f03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:46:22 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCGTGAGAATCCGCGG
AATTCCCTATGCATTCTAAGAACAGGAAAAAGTCCTACTCAGACACACAC
ACACACACACACACACACATTTTCCCCCAGCCTATTAGTTCCATTCTTTT
AGAAAATGCTGACTAATGGAAAAGGGACATATGGCAGAGAGGCCTGGGGT
TAACTCTGGACTAGAATCTATGATTATTAATATTGACAACTTGACAGGAT
CTACAATCCTCCTAAGAGACACACCCCTGCATATGTCTGTGATGGGTTAG
CTAGACTGTGTTAATTAAGATGATTTTACCCAACTGTGGATACCACCATG
TGTTAGGCTGATTTTTTGTTACCGCCCCCCCCCCACAAAAGGCAACTGAG
TATCAGCATCCATCTCTCTCCCCCTCCAGAATATGTACAGGCTCACACAC
ATGCACAGACCCATATGCATACACCTGTACACGCCTGCACACATGCACAC
ACATGCACACACATATGCTCAGACACATATGCCTACACCTGTACACGTAT
GTACACATGTATACATATACATGCGTATTACACTTGTACATACTACACAC
TTGCACCTCCATGTGTTTTTAGTTATGCCCGCCCGCTGTTGGTCTTAAAT
TGCTCTTTGTCCGAATGTTTTTGTTATTTGCACCCAGGAAACTTGAATTT
ATTGTATTCTTTCCGTAAGCCCCTCGGTCTAAATTTAATGT
CGATGATGTGGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCTGTGGAGGCCTGCTGTGGTTGGGAGTC
AGGGTGGGAGGTTCCATCCAGCATCAAGTGCCCTTCACGTGGTCGTCAGA
CATAGGGATCTAAGACTGAGGTGACTATGGGCTTTCAGAATTTGAGTTTG
AGATCCTTGGTGTGTCTTGAGTGTGACTCATCCCTAGGCGGGCAGGGTCC
CGCTGGTACGCAAGAAATATGGGCAAGCTTGGAGAATGAGAGGGTGTACC
AGCCATTGCTGGTCACCTTATTAAAGTAACTCAGGGCACCTTACACACCT
TTCCACTGTTTTTTTATTCCCCCCCTCCCGTGGTCAACCATGTTCAGTGT
TCATGAACAGCGCCCCCCCTATGTCAGACCTATGCCACCTTTCACATTCA
TTCCTCACACAACCCATGCTTACTGTCACTGCTCATGCGTCAGTCTAACC
TCACGGGGTTAGCGCATTGTTTCCTCCATGGCCTCTTTCTGTGGCTTCCC
TGTGACTGCTCTGTGACCTCTCCCTCCCATGATCATTCTCTCTGTGCCCG
ACCTCGATACTTTTCCCTCTTTCCTTTCCTTTCCTTTCCCTTCCCTTTTC
TTTCCTTTCCTTTCCCTCCCCTTACCCTTTCCTTTCCCTTTCCTTTCCCT
TTCCCTTTCCTTTTCCATTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no175_f03.g1 MSMg01no175_f03.g1 CHROMAT_FILE:
MSMg01no175_f03.g1 PHD_FILE: MSMg01no175_f03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:46:22 2005
         (165 letters)



>mm_chr7_139426967_139427531
          Length = 565

 Score =  304 bits (157), Expect = 2e-87
 Identities = 163/165 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctgtggaggcctgctgtggttgggagtcagggtgggaggttccatccagcatcaagtgcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ctgtggaggcctgctgtggttgggagtcagggtgggaggttccatccagcatcaagtgcc 306

                                                                       
Query: 61  cttcacgtggtcgtcagacatagggatctaagactgaggtgactatgggctttcagaatt 120
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 305 cttcacgtggtcgtcagacatagggatctaagactgaggtgacaatgggctttcagaatt 246

                                                        
Query: 121 tgagtttgagatccttggtgtgtcttgagtgtgactcatccctag 165
           |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 245 tgagtttgagatccttggtgcgtcttgagtgtgactcatccctag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 165
Length of database: 565
Length adjustment: 8
Effective length of query: 157
Effective length of database: 557
Effective search space:    87449
Effective search space used:    87449
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)