BAC Information

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BAC

Clone NameMSMg01-175G11
Chromosome7 (Build37)
Map Location 111,783,152 - 111,783,729
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr622, Olfr623, Olfr624, Olfr625-ps1, Olfr261-ps1, Olfr260-ps1, Olfr627, Olfr1526-ps1, Olfr629, Olfr630, Olfr69, Olfr68, Olfr67, Hbb-b1, EG436003, Hbb-bh1, Hbb-y, Olfr66, Olfr64, Olfr65, Olfr631, Olfr632, Olfr633, Olfr634-ps1, LOC233614, Olfr635, Olfr636-ps1, Olfr637-ps1, Olfr638, Olfr639, Olfr640, Olfr641, Olfr642, Olfr643, Olfr644, Olfr645, Olfr646, 4931431F19Rik, Ubqln3, Ubqlnl, E030002O03Rik, Olfr647-ps1, Olfr648, Olfr649, Olfr650-ps1, Trim6, LOC667497, EG667823, Trim12, Trim34, 9230105E10Rik, A530023O14Rik, EG434219, LOC100041595, Trim30, AI451617, LOC672495, LOC625305, EG625321, Olfr651, Olfr652, Olfr653, Olfr654, Olfr655, Olfr656
Downstream geneOlfr657, Olfr658, LOC667882, Olfr659, GA_x5J8B7W3SPQ-80592-80214, Olfr661, LOC625495, Olfr662-ps1, Olfr663, Olfr664, EG625530, LOC100042613, LOC233637, Dub1a, Dub1, Olfr665, Olfr666, Olfr667, Olfr668, Olfr669, EG545987, Olfr670, Olfr671, Olfr672, GA_x5J8B7W6B6J-189947-189022, Olfr674-ps1, Olfr675, Olfr676, Olfr677, LOC667987, Olfr678, Olfr679, Olfr680-ps1, Olfr681, Olfr682-ps1, Olfr683, Olfr684, Olfr685, Olfr686, EG668035, Olfr688, Olfr689, Olfr690, Olfr691, Olfr692, EG545989, 4632419K20Rik, Cnga4, EG244189, Cckbr, Prkcdbp, Smpd1, Apbb1, Hpxn, Trim3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-175G11.T7 (MSMg01no175_g11.b1)MSMg01-175G11.TJ (MSMg01no175_g11.g1)
ACCAG370403AG370404
length747729
length of high quality
(start - end)		314 (50 - 363)572 (74 - 645)
definitionCHROMAT_FILE: MSMg01no175_g11.b1 PHD_FILE: MSMg01no175_g11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:46:28 2005CHROMAT_FILE: MSMg01no175_g11.g1 PHD_FILE: MSMg01no175_g11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:46:28 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
TTATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCCACAAGCTCTCCATGGCATATGTATACACACACACACACAC
ACACACACACACACACACACACACACACACACACACTTTATTATGATTAT
TGTTGTTATTATTATTCCTATTATTATGCTGATGCTGATGCTGTAAACGA
CCAAAGAGTACACATGGAGAGGCACATGGCTCCAGCTGCATATGTAGCAG
AGCATGGCTTAATTTGGCATCAATGGGAGGGAAAGCCCTTGGTCCTATGA
AGGTCAGATTACCCAGGGTAGGGTAATGCTAGGGTGGTGAGGCAGGAGTG
GATGGGTTCATGTTTTTTTTCACNNNNCCTTATCCACACCCAGGGGAGGG
AGATGGGGTTGGGAGTTTNGCCCCCCCATTAAAAAAATACCTTCTCGTTG
GTGGGCCTCTTCTATCTTTTCCCCTCATTACGTATTCTCTATTTTTCTTT
TTCTCCATTCCTTCTTAACTCTATCTTTTCCTATTTCCCTTTCCTTCGCC
CTTCCATTTCCTCCCCCCATTTCTCATATTCCTCCCCTTTCCTTTTTTTT
CTCTCCTTTCCACTTTTTCTCTATCTTCCTTTCCCCCATTTCCCCATTCC
CTATTTTCTATTTCCTCCCTCTCTCCTATTATTCTTTTTCTATTTTTCCC
TTCCTACTTATTTTCTCTCTTTCCCCTATTCCTTTATTTCTCCACTT

ATTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTATAAGCACAGCTCTGACTGTGCTGA
TTTTAGCAATGCAATGGTGGCAGACTGGGTAAAGAAAATGTTTTCTTTAG
AACACCTCGTGACCCTAAATGTTGTCATAGTAGATTTACCCCTGCTTGGG
AATACCCAAAAATCACCTTCCAGAGGATTTTTAGGCTAAGAGCTACCTTC
CTGGAAGTCTTTACTAGTATTAGGATTTCCTTTATCTTTAACTCTTCATG
ACTTAAAGGCTGTTTGTTTTGTTTTTCCAATGAAAAGTTTCATAACTCCT
GGTAAAGTAGAAGATGCAAGGTAACAAACAGCTTTGCCATTTGGTGACAA
AGAGAGATATCACCCGCAAGTTGCAATTAAATTCATCAAATGCAATTTCC
TGCTTTTCCCAAGGTTTTCAGCAAATCCTACTGGGATGCAGGCTTTCTTG
GTTGCAGTTGGACTTCTTAGTCTTCTTAGTATTTTTGTTCATACTTGGAT
CACTGATGTAACTGAGAATCTCTGCCTTTAGTTCCCAGTGTGCACACTGC
ATATTATCATGTGGCAAGCTCGATCTTGAAAGACCTCTGTTCTGTAGCCT
GGAATCAAGCTATCATGCACACACTAGGGCAAGATGCTGTCTTCATTCTA
AACCATGAAAAAGCCCATAAAAGAGAGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no175_g11.g1 MSMg01no175_g11.g1 CHROMAT_FILE:
MSMg01no175_g11.g1 PHD_FILE: MSMg01no175_g11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:46:28 2005
         (572 letters)



>mm_chr7_111782885_111783854
          Length = 970

 Score =  926 bits (479), Expect = 0.0
 Identities = 551/581 (94%), Gaps = 12/581 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttataagcacagctctgactgtgctgattttagcaatgcaatggtggcagactgggtaaa 60
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 845 ttataagcacagctctgactgtactgattttagcaatgcaatggtggcagactgggtaaa 786

                                                                       
Query: 61  gaaaatgttttc---------tttagaacacctcgtgaccctaaatgttgtcatagtaga 111
           | |||| |||||         ||||||| |||| |||||||||||||||| | |||||||
Sbjct: 785 g-aaattttttcttttttttttttagaaaaccttgtgaccctaaatgttgacttagtaga 727

                                                                       
Query: 112 tttacccctgcttgggaatacccaaaaatcaccttccagaggatttttaggctaagagct 171
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 tttacccctgcttgggaatacccaaaaatcaccttccagaggatttttaggctaagagct 667

                                                                       
Query: 172 accttcctggaagtctttactagtattaggatttcctttatctttaactcttcatgactt 231
           |||||||||||||||||||||||| |||||||||| ||||||||||||||| ||||||||
Sbjct: 666 accttcctggaagtctttactagtgttaggatttcatttatctttaactctccatgactt 607

                                                                       
Query: 232 aaaggctgtttgttttgtttttccaatgaaaagtttcataactcctggtaaagtagaaga 291
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 606 aaaggctgtttgttttgtttttccaatgaaaagtttcataactcctggtaaaatagaaga 547

                                                                       
Query: 292 tgcaaggtaacaaacagctttgccatttggtgacaaagagagatatcacccgcaagttgc 351
           |||||||| |||||||||||||||||||||||||||  ||||||||||   | |||||||
Sbjct: 546 tgcaaggtgacaaacagctttgccatttggtgacaa--agagatatcatttgtaagttgc 489

                                                                       
Query: 352 aattaaattcatcaaatgcaatttcctgcttttcccaaggttttcagcaaatcctactgg 411
           ||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 488 aatgaaattcatcaaatgcaatttcctgcttttcccaaggttttcagcaaatccaactgg 429

                                                                       
Query: 412 gatgcaggctttcttggttgcagttggacttcttagtcttcttagtatttttgttcatac 471
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 gatgcaggctttcttggttgcagttggacttcttagtcttcttagtatttttgttcatac 369

                                                                       
Query: 472 ttggatcactgatgtaactgagaatctctgcctttagttcccagtgtgcacactgcatat 531
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 368 ttggatcactgatgtaactgagaatctctgcctttagttaccagtgtgcacactgcatat 309

                                                    
Query: 532 tatcatgtggcaagctcgatcttgaaagacctctgttctgt 572
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 tatcatgtggcaagctcgatcttgaaagacctctgttctgt 268


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 572
Length of database: 970
Length adjustment: 10
Effective length of query: 562
Effective length of database: 960
Effective search space:   539520
Effective search space used:   539520
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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