BAC Information

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BAC

Clone NameMSMg01-175I24
Chromosome7 (Build37)
Map Location 129,643,889 - 129,644,122
singlet/doubletsinglet
Overlap genePrkcb1
Upstream geneHs3st2, Usp31, Scnn1g, Scnn1b, Cog7, Gga2, Ears2, Ubfd1, Ndufab1, Palb2, Dctn5, Plk1, Ern2, 2010110P09Rik, LOC668486
Downstream geneCacng3, 4930413G21Rik, Rbbp6, LOC628696, LOC100042977, LOC100042981, Tnrc6a, Slc5a11, Arhgap17, Lcmt1, Aqp8, Zkscan2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-175I24.T7 (MSMg01no175_i24.b1)MSMg01-175I24.TJ (MSMg01no175_i24.g1)
ACCAG370512
length715714
length of high quality
(start - end)
---234 (127 - 360)
definitionCHROMAT_FILE: MSMg01no175_i24.b1 PHD_FILE: MSMg01no175_i24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:46:40 2005CHROMAT_FILE: MSMg01no175_i24.g1 PHD_FILE: MSMg01no175_i24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:46:40 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXX
CCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGCAGACAAAAAGTCAGCTTTGCC
TCTTCTTGTTTAGAGAACGTCTCCCTCCTGTCCCCTGTTGAGGGAGAACA
GGGACAAACAAGACTTAATGCTTCCTCATTCACACCCTCAAGAAAGGAAC
CAAGATGAGGTGCCCATGAGGCCCTGTCTTTGCCTAGGTCCTGAGTAGAT
GTAGCAAGCAGCCCCCAGTCCCTTCGCTGCAGAGGCAGATGACATGGCTC
TGGGCTCTGTTTCGAATGTGATTATTTCTAAAGATGTGACATAAATACTA
ACATGGGGTCTTTGTAGTTGCCCCACCCCCACTTGGCAGCTTAATTTGGA
CATTCAATCAAAACTGTTCACACCAAATAAACACAGCCCAAGCAGCAAAA
GCCAGAAGCCACGCAATCTGCTCACTGTGATCACTAAGTGATGGGTTTAA
TTTCCAGACACTTGGGACAGAAGCCTCCCCAGCTCTGAGGAAGGCAGTCT
TGCTTCTCTTCTCTGGAGAAACAGTGCATATTTTCTCATTTCTTCAATGG
GCTCCCCGTTTTGATAGAAGAGTCCTATCTACATTAACCACATCACTGAG
TCATGGAACTCAAAGGATTTTTGAGAACCTGACAGCCACATGCTCAAGTC
ATGTTCCCCAGGCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no175_i24.g1 MSMg01no175_i24.g1 CHROMAT_FILE:
MSMg01no175_i24.g1 PHD_FILE: MSMg01no175_i24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:46:40 2005
         (234 letters)



>mm_chr7_129643689_129644322
          Length = 634

 Score =  453 bits (234), Expect = e-132
 Identities = 234/234 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   cctgtcccctgttgagggagaacagggacaaacaagacttaatgcttcctcattcacacc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 cctgtcccctgttgagggagaacagggacaaacaagacttaatgcttcctcattcacacc 375

                                                                       
Query: 61  ctcaagaaaggaaccaagatgaggtgcccatgaggccctgtctttgcctaggtcctgagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 ctcaagaaaggaaccaagatgaggtgcccatgaggccctgtctttgcctaggtcctgagt 315

                                                                       
Query: 121 agatgtagcaagcagcccccagtcccttcgctgcagaggcagatgacatggctctgggct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 agatgtagcaagcagcccccagtcccttcgctgcagaggcagatgacatggctctgggct 255

                                                                 
Query: 181 ctgtttcgaatgtgattatttctaaagatgtgacataaatactaacatggggtc 234
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 ctgtttcgaatgtgattatttctaaagatgtgacataaatactaacatggggtc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 634
Length adjustment: 9
Effective length of query: 225
Effective length of database: 625
Effective search space:   140625
Effective search space used:   140625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)