BAC Information

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BAC

Clone NameMSMg01-175K18
Chromosome7 (Build37)
Map Location 61,395,810 - 61,396,154
singlet/doubletsinglet
Overlap genenone
Upstream geneGm1865, LOC100040718, LOC668789
Downstream geneMrps33p, LOC622146, Luzp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-175K18.T7 (MSMg01no175_k18.b1)MSMg01-175K18.TJ (MSMg01no175_k18.g1)
ACCAG370591AG370592
length709705
length of high quality
(start - end)
312 (50 - 361)327 (379 - 705)
definitionCHROMAT_FILE: MSMg01no175_k18.b1 PHD_FILE: MSMg01no175_k18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:46:48 2005CHROMAT_FILE: MSMg01no175_k18.g1 PHD_FILE: MSMg01no175_k18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:46:48 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCAAGAAGATGAACTCCAGAAAAGCAAATAACCCCATTAAAAA
TGGGGTACACAGCTAAAGAAAGAATTTCCAACTGAGGAATGCGGAATGAG
AAGCACCTGAAAAAGTGTTTAACATCCTTAATCATCAGGGAGATGCAAAT
CAAAACAACTCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCA
AAAATTAAAGTGACAGCAGATGCTCTTAAGGATGTGGAGAAAGAGGAACA
CTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAATC
AGTCTGGCGGTTTTTCAGAATTCCGCCACCCACTACTACTGGAGGATCCC
GCAATACCTCTCCTGGGCCCACACCCAGAAGATGCTCCAACTAGTAATAA
GGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAA
GTTGGAAAGAATCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATG
TGATACATTTACACAATAAAGTACTACTCATCAATTAAAAACAATGAATT
CACGAAATTCTTAGGCAAATGTAAGGATCTGGAGAATATCATCCTGAGTG
AGGAATATTCCTCTTAAAAGAGATAAATCATACATTCTCATCTTCTTAAT
ATTTAAAGA
ACCAATGATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAAAACTAGCTCTTTGACGTGATA
CCTAGCCAAGCTAGGAAATAGCTCACAAATTATTAACTTGTAGTTTCTTT
TTAAAATTATGCTTCATTTATTCATGGTATTAGGAGACTGTTTTTTGAAG
AAAATATTAATTTCTCTTGATTTAATATGTAATTAAATGACATTTCCTTA
ATTATATCCCATTCATTTCCATTTCTAAGAAATATTAGGACCTCAAAACA
GAAATCTTGTGGCAATGCTAATCTTTGATACAGTAAAAGAACCCCTCTGC
AAATAACCTCTTTAGCTGCTCGCCTAATTCCCCTTTTCAGCATTCCTCCT
TGGTTTTTTACCAGGCCACTCTCTTTTATTCATAGATTCACGCAGGAAGT
TAATTCTCCATGATTCATTTGAGAAGTAAATATTCTTCCAGTTTGTCCAG
ATGTCCTGTTGCCTTGCATTAATTTACTAGCTTCTAATTTCTCTGCTCTC
AATTATTTTCTAAAAGTAGTTTTCAAAAATTGTTCATCAGACAGAACTGT
TTAAATATATATATAAATATATATGTAAAGTCCTTCAATTTTTAACTTAT
CACTTAATGTCTTATTTGAAGCCACAAAAATGCAGATATCAGACCAACTA
ATACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no175_k18.g1 MSMg01no175_k18.g1 CHROMAT_FILE:
MSMg01no175_k18.g1 PHD_FILE: MSMg01no175_k18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:46:48 2005
         (327 letters)



>mm_chr7_61395608_61396334
          Length = 727

 Score =  551 bits (285), Expect = e-161
 Identities = 321/345 (93%), Gaps = 20/345 (5%)
 Strand = Plus / Plus

                                                                       
Query: 3   cccttttcagcattcctccttggttttttaccaggccactctcttttattcatagattca 62
           |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct: 203 cccttttcagcattcctcctcggttttttaccaggccattctcttttattcatagattca 262

                                                                       
Query: 63  cgcaggaagttaattctccatgattcatttgagaagtaaatattcttccagtttgtccag 122
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 cacaggaagttaattctccatgattcatttgagaagtaaatattcttccagtttgtccag 322

                                                                       
Query: 123 atgtcctgttgccttgcattaatttactagcttctaatttctctgctctcaattattttc 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 atgtcctgttgccttgcattaatttactagcttctaatttctctgctctcaattattttc 382

                                                                       
Query: 183 taaaagtagttttcaaaaattgttcatcagacagaactgtttaaatatatatata-a--- 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |   
Sbjct: 383 taaaagtagttttcaaaaattgttcatcagacagaactgtttaaatatatatatatatat 442

                                                                       
Query: 239 ----------------atatatatgtaaagtccttcaatttttaacttatcacttaatgt 282
                           |||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 443 atatatatatatatatatatatatgtaaaggccttcaatttttaacttatcacttaatgt 502

                                                        
Query: 283 cttatttgaagccacaaaaatgcagatatcagaccaactaataca 327
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 cttatttgaagccacaaaaatgcagatatcagaccaactaataca 547


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 327
Length of database: 727
Length adjustment: 9
Effective length of query: 318
Effective length of database: 718
Effective search space:   228324
Effective search space used:   228324
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)