BAC Information

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BAC

Clone NameMSMg01-176M09
Chromosome7 (Build37)
Map Location 52,601,020 - 52,693,868
singlet/doubletdoublet
Overlap gene2410127E16Rik, Mtag2, Lin7b, Snrp70, Kcna7, Ntf5, LOC100040019, Lhb, Ruvbl2, Gys1
Upstream geneShank1, 1700008O03Rik, Syt3, Lrrc4b, 0610012D14Rik, Josd2, 2310044H10Rik, 1700021P22Rik, Mybpc2, Spib, Pold1, Nr1h2, Napsa, Kcnc3, Myh14, 1700023D19Rik, Zfp473, Vrk3, EG628904, Atf5, Nup62, Il4i1, Tbc1d17, Akt1s1, Pnkp, Ptov1, Med25, Fuz, Ap2a1, Stk22s1, Cpt1c, Prmt1, Bcl2l12, Irf3, AI480556, Rras, Prr12, Prrg2, Nosip, Rcn3, Fcgrt, Rps11, Rnu35b, Rpl13a, Rnu35a, Rnu34, Rnu33, Rnu32, Flt3l, Aldh16a1, Pih1d1, Slc17a7, Gm581, LOC100039953, Tifp39, BC050196, Dkkl1, Tead2, Cd37, Slc6a16, 1700039E15Rik, Trpm4, LOC100040970, Hrc
Downstream geneFtl1, Bax, Dhdh, Nucb1, Tulp2, Myd116, Plekha4, Hsd17b14, Bcat2, Fgf21, Fut1, Izumo1, Rasip1, 5430432N15Rik, Fut2, Sec1, Gm484, Car11, Dbp, Sphk2, Rpl18, 4930403C10Rik, Spaca4, Sult2b1, EG545963, Lmtk3, Pscd2, Kcnj14, Grwd1, Grin2d, Kdelr1, Syngr4, Tmem143, Emp3, BC013491, LOC677321, Abcc6, Nomo1, Kcnj11, Abcc8, Ush1c, Otog, Myod1, Kcnc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-176M09.T7 (MSMg01no176_m09.b1)MSMg01-176M09.TJ (MSMg01no176_m09.g1)
ACCAG371369AG371370
length1,2081,249
length of high quality
(start - end)		572 (131 - 702)372 (134 - 505)
definitionCHROMAT_FILE: MSMg01no176_m09.b1 PHD_FILE: MSMg01no176_m09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:48:56 2005CHROMAT_FILE: MSMg01no176_m09.g1 PHD_FILE: MSMg01no176_m09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:48:57 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,693,301 - 52,693,868)(52,601,020 - 52,601,391)
sequence
CACCCCTNTNNNNCCACTGGGCGCTATAGACTCCTATAGGGAGAGGATCC
GCGGAATTCCCGGGACCCAANCCTCCCCTGAAAAGGCCTCCCTGGAAACA
ATGTCGCAGTGTGTTTCCCTCTGGATATCGAGGAAATGAAACTGAGGTTG
ACACTTCTGGTCTCTGAGAAAAGCAGCTAGACTCTTTTCAGAGACGATCC
TTGGATTAAAAGAGTGGATGGACAATTCCCAGAATTCCCAGGGGAAGCCC
ACTCTCTGGCCCAAGCGGTGATGATGATGATGATGGTTTCAAGTCTGGGT
AGGAAGGCTGAGGTGGGGTCTGTAGTACCGCCTACCTCACCCAGGAACCA
GGTGGTGAGGAAGCCGAACAGGACAGCGTCATTGGCCTCGCGGTCGTACC
AGGGTACTCTGATGTTGCAGGTGTCCCAAAGCTCACCCTTCCAGCGCTCC
AGGGCCCAGGCTGAGGCTCCTACATCCAGGAGCACCACTAGGGGTCCCCC
CTCGATCAGCCAACGCCCAAAATACACCTGAGGGAGAGGCAAAGGGAGGC
TCAGAAGACCTGGCCCGCATTCCTCGCCGGCTTACATCCCCAGCCTGGTA
ACTGAGCTCAGCTGTCTCACGTTCCCCTCACCCACGGCCTCATCTGTGGC
CCTCTGTAACCCCTCCCACTACCTTTCTCCTCTCCCCATTGGCCTGTTCT
GTCACCTGTGTCACGTGTCTATCAGCCAGGACTGTACTTTCCTACCAATT
GCCACCTTCCTAAAACTCGATGTTCTATTTCAGTCCCCATTAGCCATTCT
CCTTCCGGAGACCTCAGGTATGGCTCCCGGCCCTTGATCTTACTCTGTCC
CAACCTGTCTTCGTCTGGCCAGGGCCTCACTGGAGCTCCCCTCCCCCTCC
CAGCTGTTGTCTGGCCCTTTTGCTGGCAGGGGGTCTCTTTTTTTACTAAA
CATTTGCTCCGTGTCATGGTTTTGCCCACTCTTGTGCCTCATAAGGTACT
TTTTTTGAGTCTATCTGCATGTCGTTAACCCACTCCCGAAACCATCTCTG
GTACTTAGTTGTACTCCCCTGTCACTTGTCTTTCTCTCTGGTTCTCCTCT
CTTAGGTTTTTCCTTTTCTCCTATTCTCTTCTCTTTGGCTTTCTCCCTTT
GTAACTTTTTTCTTTCTAATCAATTACTTCTACTTTTCTATATTTAATCA
TAACCTTA

CCGATCCTTNTNTAAAGAGGTGAGGCXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCAATAAAAAGCCCGATCTGNAGA
ACAAGTTCCAGGACAGAGCCCTAAACAAACCCCAACCAAACCAAGCAAAC
AAACAAACAAAAAGAACCCAAGAGGCAAACAGGCAGCTACATGGGACAGA
GGATTTACAATAAAATTAGGCATATCTATGTGGAATTCTCTTCTCTGTCT
TTTTAGTACCCAAGTCAAGATTGAACCTCCAGGGCCGGAGAGATGGCTCA
GTGGTTAAGAGCACTGACTGCTCTTTCAGAGGTCCTGTGTTCAATTTCCA
GCAACCACATGGTGGCTCACAACCATCTGTACTGGGATTCTGATGCCCTC
TCCTGGTGTGTGTCTGAAGACAGTGACAGTGTACTCACATACATAAAATA
TAGAATATTTTTTTAAAAATTGAACCTCCAACCCAAGCTTGCTAAGCCAG
TGCTATGTATAGCACCGAGCACTCTTCAGGTTATAAATGTTTAAACGAAT
CTTTGCTTATTTTATGTGTATGTGACATGGCACTCTATGGCGGCCAGAGG
ACACAATCATAGGAATTGACTTTCTTCTTCCCCAGGAATTGACCTCAGGT
GCCAGGCCTGGGGGCCAGAACCTTCACCCACTGAGCCACCCATCTTGCAT
GACCCCCTCTTTCCTTTTTAAGCAGGAGGCAAGGCCCCCCCAAAAAAGCC
CCAGAACCCCGGCTGGGTTCCCAACTTGCCCACCCCCTGCCCCCTGACCC
AGGGAACCCAAACCCGGCCGCCGGGTTTGAAACCTCCCTAAAAAAAAAAA
ACTGGGCCCAAGGCCAGGGGGGGGACCGGGCTCCCGGAGCGCAAAAGAAA
AGGGGGAATCCCCGGGGAAATTTCAAGCCCCCAACCCCGGGTCTCCCAAA
AAGGGGAAATCCCCGGGCCCCGCCCCCCCCCCAAAATAAAAGGGAGAAAA
CCCCCCCCCCCCCCAAAAAAAAGGGGAACAAAAAAAAACACCCCGCGGGG
GGAATTTGGGCACCCCCCCCCTCTTGTGAAAAAGAGGGGGAGAAAAAACC
CCCCCAAAAAGGGNAGAGACTCCTCCGCCCCCGTCCCCTAATCAGTCGCC
TCTCCCCTTAATAATAAACCCCCCCATACCCACTTCCCTCCTCCTAAACA
ACAAAAAATATCGCCCCCCGCGTCACAAAAAAAGAACAACACACGCTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no176_m09.b1 MSMg01no176_m09.b1 CHROMAT_FILE:
MSMg01no176_m09.b1 PHD_FILE: MSMg01no176_m09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:48:56 2005
         (572 letters)



>mm_chr7_52693101_52694072
          Length = 972

 Score = 1075 bits (556), Expect = 0.0
 Identities = 565/568 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggaaatgaaactgaggttgacacttctggtctctgagaaaagcagctagactcttttca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 768 aggaaatgaaactgaggttgacacttctggtctctgagaaaagcagctagactcttttca 709

                                                                       
Query: 61  gagacgatccttggattaaaagagtggatggacaattcccagaattcccaggggaagccc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 708 gagacgatccttggattaaaagagtggatggacaattcccagaattcccaggggaagccc 649

                                                                       
Query: 121 actctctggcccaagcggtgatgatgatgatgatggtttcaagtctgggtaggaaggctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 actctctggcccaagcggtgatgatgatgatgatggtttcaagtctgggtaggaaggctg 589

                                                                       
Query: 181 aggtggggtctgtagtaccgcctacctcacccaggaaccaggtggtgaggaagccgaaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 aggtggggtctgtagtaccgcctacctcacccaggaaccaggtggtgaggaagccgaaca 529

                                                                       
Query: 241 ggacagcgtcattggcctcgcggtcgtaccagggtactctgatgttgcaggtgtcccaaa 300
           ||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct: 528 ggacagcgtcattggcctcgcggtcgtaccagggtaccccgatgttgcaggtgtcccaaa 469

                                                                       
Query: 301 gctcacccttccagcgctccagggcccaggctgaggctcctacatccaggagcaccacta 360
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 468 gctcacccttccagcgctccagggcccaagctgaggctcctacatccaggagcaccacta 409

                                                                       
Query: 361 ggggtcccccctcgatcagccaacgcccaaaatacacctgagggagaggcaaagggaggc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 ggggtcccccctcgatcagccaacgcccaaaatacacctgagggagaggcaaagggaggc 349

                                                                       
Query: 421 tcagaagacctggcccgcattcctcgccggcttacatccccagcctggtaactgagctca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 tcagaagacctggcccgcattcctcgccggcttacatccccagcctggtaactgagctca 289

                                                                       
Query: 481 gctgtctcacgttcccctcacccacggcctcatctgtggccctctgtaacccctcccact 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 gctgtctcacgttcccctcacccacggcctcatctgtggccctctgtaacccctcccact 229

                                       
Query: 541 acctttctcctctccccattggcctgtt 568
           ||||||||||||||||||||||||||||
Sbjct: 228 acctttctcctctccccattggcctgtt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 572
Length of database: 972
Length adjustment: 10
Effective length of query: 562
Effective length of database: 962
Effective search space:   540644
Effective search space used:   540644
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no176_m09.g1 MSMg01no176_m09.g1 CHROMAT_FILE:
MSMg01no176_m09.g1 PHD_FILE: MSMg01no176_m09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:48:57 2005
         (372 letters)



>mm_chr7_52600820_52601591
          Length = 772

 Score =  719 bits (372), Expect = 0.0
 Identities = 372/372 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaccaaaccaagcaaacaaacaaacaaaaagaacccaagaggcaaacaggcagctacatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaccaaaccaagcaaacaaacaaacaaaaagaacccaagaggcaaacaggcagctacatg 260

                                                                       
Query: 61  ggacagaggatttacaataaaattaggcatatctatgtggaattctcttctctgtctttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggacagaggatttacaataaaattaggcatatctatgtggaattctcttctctgtctttt 320

                                                                       
Query: 121 tagtacccaagtcaagattgaacctccagggccggagagatggctcagtggttaagagca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tagtacccaagtcaagattgaacctccagggccggagagatggctcagtggttaagagca 380

                                                                       
Query: 181 ctgactgctctttcagaggtcctgtgttcaatttccagcaaccacatggtggctcacaac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctgactgctctttcagaggtcctgtgttcaatttccagcaaccacatggtggctcacaac 440

                                                                       
Query: 241 catctgtactgggattctgatgccctctcctggtgtgtgtctgaagacagtgacagtgta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 catctgtactgggattctgatgccctctcctggtgtgtgtctgaagacagtgacagtgta 500

                                                                       
Query: 301 ctcacatacataaaatatagaatatttttttaaaaattgaacctccaacccaagcttgct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctcacatacataaaatatagaatatttttttaaaaattgaacctccaacccaagcttgct 560

                       
Query: 361 aagccagtgcta 372
           ||||||||||||
Sbjct: 561 aagccagtgcta 572


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 372
Length of database: 772
Length adjustment: 9
Effective length of query: 363
Effective length of database: 763
Effective search space:   276969
Effective search space used:   276969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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