BAC Information

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BAC

Clone NameMSMg01-177I21
Chromosome7 (Build37)
Map Location 51,958,515 - 52,122,897
singlet/doubletdoublet
Overlap gene1700023D19Rik, Zfp473, Vrk3, EG628904, Atf5, Nup62, Il4i1, Tbc1d17, Akt1s1, Pnkp, Ptov1
Upstream geneKlk13, Klk12, Klk11, Klk10, Klk9, Klk8, Klk7, Klk6, Klk5, Klk4, Klk2-ps, Klk15, Klk1b7-ps, Klk1b8, Klk1b1, Klk1b9, Klk1b10-ps, Klk1b11, LOC100039713, Klk1b26, Klk1b18-ps, Klk1b27, Klk1b14-ps, Klk1b15-ps, Klk1b21, Klk1b22, Klk1b16, Klk1b24, Klk1b3, Klk1b4, Klk1b5, Klk1, 1700028J19Rik, LOC668661, Acpt, LOC628854, EG638453, Clec11a, Shank1, 1700008O03Rik, Syt3, Lrrc4b, 0610012D14Rik, Josd2, 2310044H10Rik, 1700021P22Rik, Mybpc2, Spib, Pold1, Nr1h2, Napsa, Kcnc3, Myh14
Downstream geneMed25, Fuz, Ap2a1, Stk22s1, Cpt1c, Prmt1, Bcl2l12, Irf3, AI480556, Rras, Prr12, Prrg2, Nosip, Rcn3, Fcgrt, Rps11, Rnu35b, Rpl13a, Rnu35a, Rnu34, Rnu33, Rnu32, Flt3l, Aldh16a1, Pih1d1, Slc17a7, Gm581, LOC100039953, Tifp39, BC050196, Dkkl1, Tead2, Cd37, Slc6a16, 1700039E15Rik, Trpm4, LOC100040970, Hrc, 2410127E16Rik, Mtag2, Lin7b, Snrp70, Kcna7, Ntf5, LOC100040019, Lhb, Ruvbl2, Gys1, Ftl1, Bax, Dhdh, Nucb1, Tulp2, Myd116, Plekha4, Hsd17b14, Bcat2, Fgf21, Fut1, Izumo1, Rasip1, 5430432N15Rik, Fut2, Sec1, Gm484, Car11, Dbp, Sphk2, Rpl18, 4930403C10Rik, Spaca4, Sult2b1, EG545963, Lmtk3, Pscd2, Kcnj14, Grwd1, Grin2d
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-177I21.T7 (MSMg01no177_i21.b1)MSMg01-177I21.TJ (MSMg01no177_i21.g1)
ACCAG371911AG371912
length701714
length of high quality
(start - end)		559 (49 - 607)244 (78 - 321)
definitionCHROMAT_FILE: MSMg01no177_i21.b1 PHD_FILE: MSMg01no177_i21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:50:08 2005CHROMAT_FILE: MSMg01no177_i21.g1 PHD_FILE: MSMg01no177_i21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:50:09 2005
singlet/doubletdoubletdoublet
BLAST hitpluralunique
Map location.(51,958,515 - 51,959,065)(52,122,657 - 52,122,897)
sequence
NNNTTATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAAAGAGGA
TCCGCGGAATTCTGTCTTCACTCCCTTGCCTCCAGGGGCCCGGAAGCCCC
GCCTATCCCTCTCGTCCAGCAATTGACCCATAGCTTCTTTACAGACATAT
CAAGAACCAATTGGTGAACAGGACCTCGGCATCAGAACCACCCCCTACAA
GAACTCACTTCAGAGATGGAAACTTAAAAAGTAAAGTTTTATTTTCTGAG
TGCTCAGGGAGGCAACCCGTTTGGGATCTGTACTGCATCCCCGGGGGAGA
CAGACGTGTAACATTTTTATAGGATGGTAACAAAAAGGGAGGGGGAGCAG
GGTGGTCTGTTGCATTGACCAATCATATTTTCACAAAAGGGGGTTGGGCT
TTATCCAGGTCACCTGGTTTCAGGGTCCTTGATTCAGCTTTTGTGACCAG
GTCCCCTCCTGGACTCTGACCTGGAAGGTTAGAATGATATGGGAACAAAG
GAGTGGGCATGCCGCACGTAGTCGGTTACATCAAGACGGGCAGCACATTT
GACTTGTGTGACTTAGTTTAGATAACAGAATAAGAGCATCTTCCCTCTTT
GCATCCCGTAGTGGTTAGTAGACCAGTATGAAACACCCATAGATGGACAG
GAGCTGGGCTCCAGGCACTTGGGGACATAAACTCACTTTTGAGTCCGCCA
G

TTCACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCCCCTCTGCTGCAGGAGGGTGC
TCGAGTCTTTGGAGCCCTGGGGCCTATCGGGCCCTCTTCACCTGGGCTGA
CTCTTGGGGGCCTCGCAGTGAACGAGCACCGGCTCAGCAACAAACTGCTG
GCCTGGAGTGGCGTGCTGGAGTGGCAGGAGGTGAGGCTGGCTGGGCCACC
CAAATCTCTGAGTGGGTGGAAGGCATGGGGGGGAGGGGCCCGGGCACTTT
GCTGAGTCTCCCCACCCGTTTACTCGTAGAAGCGTAGACCCTTCTCGGAC
TCCACAGCCAAGCTGAAACGCACCCTGCCCTGCCAGGCCTATGTGAACCA
GGGCGAGAACCTGTGAGTGTGGTAGTGGGCAGAGCCTGTTTTGTCCTATG
ATGCAGGGCATGGATTCAGATGCACCCCCTATTGCTGGTAGACGGATCAG
TGCTCCTAGATACTGACCACCGCCTTTATCCCACACCCGCCCGCTGTTGT
AGATTATTGACCCCGCTGCACCCCCCCCATACGCAGTCACTCCTCTAAAG
CACCTAATACCATACTCATTATTTTTTTTATCCGTTCCCGCGAAATAACG
CATCCACCCAATTATAGTCACCTTGTGTGAATAACAGCATGACAATTTGT
GTATAACCTTCGAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no177_i21.b1 MSMg01no177_i21.b1 CHROMAT_FILE:
MSMg01no177_i21.b1 PHD_FILE: MSMg01no177_i21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:50:08 2005
         (559 letters)



>mm_chr7_51958307_51959265
          Length = 959

 Score = 1036 bits (536), Expect = 0.0
 Identities = 548/552 (99%), Gaps = 2/552 (0%)
 Strand = Plus / Plus

                                                                       
Query: 9   gaattctgtct-tcactcccttgcctccaggggcccggaagccccgcctatccctctcgt 67
           ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 gaattctgtctctc-ctcccttgcctccaggggcccggaagccccgcctatccctctcgt 267

                                                                       
Query: 68  ccagcaattgacccatagcttctttacagacatatcaagaaccaattggtgaacaggacc 127
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 ccagcaattgacccatagcttctttacagacatatcaagaaccaattggtgaacaggacc 327

                                                                       
Query: 128 tcggcatcagaaccaccccctacaagaactcacttcagagatggaaacttaaaaagtaaa 187
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 tcggcatcagaaccaccccctacaagaactcacttcagagatggaaacttaaaaagtaaa 387

                                                                       
Query: 188 gttttattttctgagtgctcagggaggcaacccgtttgggatctgtactgcatccccggg 247
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 388 gttttattttctgagtgctcagggaggcaacccgtttgggatctgtactgcatccccagg 447

                                                                       
Query: 248 ggagacagacgtgtaacatttttataggatggtaacaaaaagggagggggagcagggtgg 307
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 448 ggagacagacgtgtaacatttttataggatgggaacaaaaagggagggggagcagggtgg 507

                                                                       
Query: 308 tctgttgcattgaccaatcatattttcacaaaagggggttgggctttatccaggtcacct 367
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 tctgttgcattgaccaatcatattttcacaaaagggggttgggctttatccaggtcacct 567

                                                                       
Query: 368 ggtttcagggtccttgattcagcttttgtgaccaggtcccctcctggactctgacctgga 427
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 ggtttcagggtccttgattcagcttttgtgaccaggtcccctcctggactctgacctgga 627

                                                                       
Query: 428 aggttagaatgatatgggaacaaaggagtgggcatgccgcacgtagtcggttacatcaag 487
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 aggttagaatgatatgggaacaaaggagtgggcatgccgcacgtagtcggttacatcaag 687

                                                                       
Query: 488 acgggcagcacatttgacttgtgtgacttagtttagataacagaataagagcatcttccc 547
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 acgggcagcacatttgacttgtgtgacttagtttagataacagaataagagcatcttccc 747

                       
Query: 548 tctttgcatccc 559
           ||||||||||||
Sbjct: 748 tctttgcatccc 759


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 559
Length of database: 959
Length adjustment: 10
Effective length of query: 549
Effective length of database: 949
Effective search space:   521001
Effective search space used:   521001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no177_i21.g1 MSMg01no177_i21.g1 CHROMAT_FILE:
MSMg01no177_i21.g1 PHD_FILE: MSMg01no177_i21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:50:09 2005
         (244 letters)



>mm_chr7_52122457_52123100
          Length = 644

 Score =  466 bits (241), Expect = e-136
 Identities = 241/241 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcccctctgctgcaggagggtgctcgagtctttggagccctggggcctatcgggccctct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcccctctgctgcaggagggtgctcgagtctttggagccctggggcctatcgggccctct 382

                                                                       
Query: 61  tcacctgggctgactcttgggggcctcgcagtgaacgagcaccggctcagcaacaaactg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcacctgggctgactcttgggggcctcgcagtgaacgagcaccggctcagcaacaaactg 322

                                                                       
Query: 121 ctggcctggagtggcgtgctggagtggcaggaggtgaggctggctgggccacccaaatct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctggcctggagtggcgtgctggagtggcaggaggtgaggctggctgggccacccaaatct 262

                                                                       
Query: 181 ctgagtgggtggaaggcatgggggggaggggcccgggcactttgctgagtctccccaccc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgagtgggtggaaggcatgggggggaggggcccgggcactttgctgagtctccccaccc 202

            
Query: 241 g 241
           |
Sbjct: 201 g 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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