BAC Information

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BAC

Clone NameMSMg01-177N16
Chromosome7 (Build37)
Map Location 106,817,352 - 106,817,641
singlet/doubletsinglet
Overlap geneSlco2b1
Upstream geneLOC100040769, Prkrir, Wnt11, LOC666978, Uvrag, EG666529, Dgat2, Mogat2, Mtap6, Serpinh1, Gdpd5, 2810406K13Rik, Rps3, Rnu15-b, EG449630, Arrb1, EG245190
Downstream geneOlfr520, Olfr521, Neu3, Spcs2, Xrra1, EG330602, Chrdl2, Pold3, 2610209A20Rik, Kcne3, LOC631577, Pgm2l1, Gpx2-ps1, P4ha3, Ppme1, AU020772, Ucp3, Ucp2, Dnajb13, LOC667112, Chchd8, Mrpl48, LOC100041155, Rab6, LOC100041167, Plekhb1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-177N16.T7 (MSMg01no177_n16.b1)MSMg01-177N16.TJ (MSMg01no177_n16.g1)
ACCAG372120AG372121
length742771
length of high quality
(start - end)
320 (46 - 365)291 (76 - 366)
definitionCHROMAT_FILE: MSMg01no177_n16.b1 PHD_FILE: MSMg01no177_n16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:50:30 2005CHROMAT_FILE: MSMg01no177_n16.g1 PHD_FILE: MSMg01no177_n16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:50:30 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCCTCTTATTGCTTTCATTACTTTTATTTATGTGTATACATACGTG
CACATAAGTACAGGTGCCAGCAGACCCTAGCAGCATCAGATCTCCAGTAA
CTGGAGTTACAGGTGCTTGTGAGCCACTCAAAGTGAGTGCTGGGCCCTGA
ACTTGAGTCCTCTGCAAGAGCAGTATATGCTTTGAACTACTGAGCCATCT
CTCCAGCCCTCGGTTTCTTCTCTTTAAACAAACAAACAAACAAACAAACA
AACAAACAAACAAATAAAACTACTCAATCACCCAATACAGAGAAAGTGGG
ATAGTTTTTAGAATTTTATTCACGCCGCACCCTCCGGAGAAACTCTTTTA
TAAGCTTCACCTGTCCCCCCCAAAAAGACCAATGACCAATGAGCTGAGGC
AGGAAATAGGAGGCGGGACACTGGCAGGAAGAGAGGATTCTGGGTAATAG
TGAAAGAATAAAAGGAGACGCTAGGCAAGACCAGGAGAGAGAGGACTCAG
AGAGAGCCTGAGTTCCAGGCGTTAATCATCAAGCAACTGAACTCAGGATA
GAATAAAGAGAGACACAGGTATTTAAGAGAGAGAGAGTTTTGGAGAGATG
GACCAAGAGGACAGATGCAAAACAGTAGGNAGATGAATTCACGGAGATAC
TGAGGAGACCCAAGGAAGAAGCATGCCCGCTGGGTCGTGCCA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCCCTTCAGGTAGCTAAGGGAAAGAA
AGGCATGGCCCTGCCCTCCAGGAACCTTCCATCCCTTGTGGAGAAGGCTG
TGGCTGCTGAGAAGTGGGGGATGGGCTCACAGTCCACTGCAGTGATGAGG
ACAGCAGAATGAGCATTGTGGAGAGAGGAGCCCTCTGGAGCCAGGCCGCC
AGAAAGGACAGCATCCGAATGGGAGGGGCAGAGGGAGAGTGGTTCTGTGC
TGGAAGTGAAGAGAGTCTGGCTTTCCTCTCTGGACAAACCTGGGTGTGTC
CATGCCCACCCCCCATTTTTATGTCCCTCTTTACAGTGAAGACCAAGTAA
TATAAAAGACCAGTTCGCGCCCCAGCTTCAGATACCCTGAGCAAGTGTGG
AGGGGTGGGGTATTTACCTTTTTTTCCCCCCCCTCTTACTTTTCTTTTTT
CCCCTTTACTTTTTTTCCTCCCTTCTTTTTATCCTTCACTCCCACCCTTT
CCCCTTTATTACTCTTTGCCATTGTCTTTTATTCCTTGCCTTCCCTTCCC
CATTCTAATATTTCTTTCCCCTTCGCCCCTTTCTTTTTCAATCCTTTTCG
CGTTCCCCGTTCCCGTTTTCCTCTAATTCATCACTTCCTTTCTTTCCTCC
CTCGTGTAAACCAATCCTTTAACGTTTCATTCTCCCTTTTTCACCCTACC
TCCCTCACTTTTTTTTTTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no177_n16.g1 MSMg01no177_n16.g1 CHROMAT_FILE:
MSMg01no177_n16.g1 PHD_FILE: MSMg01no177_n16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:50:30 2005
         (291 letters)



>mm_chr7_106817152_106817842
          Length = 691

 Score =  538 bits (278), Expect = e-157
 Identities = 287/290 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cccttcaggtagctaagggaaagaaaggcatggccctgccctccaggaaccttccatccc 60
           |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||
Sbjct: 490 cccttcaggtagctaagggaaagaaaggcatggccctgccctccaggaattttccatccc 431

                                                                       
Query: 61  ttgtggagaaggctgtggctgctgagaagtgggggatgggctcacagtccactgcagtga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 ttgtggagaaggctgtggctgctgagaagtgggggatgggctcacagtccactgcagtga 371

                                                                       
Query: 121 tgaggacagcagaatgagcattgtggagagaggagccctctggagccaggccgccagaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 tgaggacagcagaatgagcattgtggagagaggagccctctggagccaggccgccagaaa 311

                                                                       
Query: 181 ggacagcatccgaatgggaggggcagagggagagtggttctgtgctggaagtgaagagag 240
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 310 ggacagcatccgaatgggaggggcagagggagagcggttctgtgctggaagtgaagagag 251

                                                             
Query: 241 tctggctttcctctctggacaaacctgggtgtgtccatgcccacccccca 290
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 tctggctttcctctctggacaaacctgggtgtgtccatgcccacccccca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space:   192324
Effective search space used:   192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)