BAC Information

Click to search

BAC

Clone NameMSMg01-178A14
Chromosome7 (Build37)
Map Location 145,110,859 - 145,111,042
singlet/doubletsinglet
Overlap genenone
Upstream geneMgmt, EG621804, Ebf3, 9430038I01Rik, Txnl2
Downstream geneLOC435235, Tcerg1l, LOC100043290, Mapk1ip1, Ppp2r2d, Bnip3, EG668784
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-178A14.T7 (MSMg01no178_a14.b1)MSMg01-178A14.TJ (MSMg01no178_a14.g1)
ACCAG372244AG372245
length711713
length of high quality
(start - end)		531 (46 - 576)255 (75 - 329)
definitionCHROMAT_FILE: MSMg01no178_a14.b1 PHD_FILE: MSMg01no178_a14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:50:44 2005CHROMAT_FILE: MSMg01no178_a14.g1 PHD_FILE: MSMg01no178_a14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:50:44 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAGCCTTCGATCGCTACTCCACCTATGAGAAGGTACAGGAAAATCT
GGGCCAGCCCAAGATCACTTTTGTCACTGGCCTCTGTTCAAGGCTAGGAG
ATGATATCCATGGTCCCCAGGGAAGAACTCATGGCACTTGGATTAAGAAT
CACAAGGTACATGGTGGGCTCAGGAGGAGACCAGAGGAGCAGGCATTCAC
ATTGCTGCTGCAGACCAAATACACAGTAAGAAGCAACTAAAGGAAAGGGT
GGCTTATTATGGTTCCAGACCACGACAAGAGGGGGGCATGGCAACAGGAG
CATGACCCCGGTGAGTGTGTGAACGCTGGTGTTCCTGACACCTGCTTGCT
GGGATGTTAGATTTGAGCCCGCAATCAGGTCAGGCAACAGGAAAGGGCTG
TCCTGTATCATAGCTGTCTCCTCTGAAGTTATTGGTTCCTTCAGTGTGGT
GGGTGCCCAGAATGCATAGATTCTTAGAACTGAAGCTTTCCCCGAAGAAC
TGGTTAGACTGTAGCTTGAACAAAATGATGGGCAAAGCCCTTTCTTTCTT
GCTCTGTGCCCGGGAAGAAACGCAGTCTCCAGTTGCATTCTCTGTCCTTT
CAGGGGGTCAGAGCACACACGCTGTTGATTGCCTGACTGCCTGTATCTGC
CAGCCATCGTN

CGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTGGAATTTGGGTTTCTTTAAAAACAC
GGAAATATTATAAGAATGTGTTTTTGTTTTAACCCCAGGTGTGGGGCTAT
CAGGCTGCTTCAGACTCTGCAGCAGTTGACTCTGATTTGCCTCATGCTCT
AGCAGAGACATGGCTTTGCCAGCTGCAGATAGTTTCTACATTTGTGTGGA
ATTCTGGGAACTTTTCATAGGATATATATATATATATATATATATATATA
TATATATATATATATATATATATGCATGCTAGGACCCTGAAGAACGCACA
CATATATTTTTTTTTTCCCCCCCCCCCCCCCCCGTGTGTGTGTGAGAGTG
TGAGTGAGGTGGCCCCCCCCCCAGAAAAAGAAAGAGAGAGAGAGAGAGAG
ACACATATACCCCCCAAACACTCATACACTCACCCCCTGTCCGTGTGTGT
ATGTACATACACACCTATAGTCTATGCGTTTGTCTCCATATATATCTATA
TATACATACACATACGTGTGCGCGCCCGCATTTTATATTCCCCCTCCCCC
TTCTCATTTACATCTACACATATACTCTTTCACCCCCCCCTCCCTTTTAT
CCTTTTACTCAAGACCGCACCCCGATTCTTATGTCGTTACCGCTGGTCCA
AGCCGCCATTACG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no178_a14.b1 MSMg01no178_a14.b1 CHROMAT_FILE:
MSMg01no178_a14.b1 PHD_FILE: MSMg01no178_a14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:50:44 2005
         (531 letters)



>mm_chr7_145110655_145111584
          Length = 930

 Score =  329 bits (170), Expect = 3e-94
 Identities = 182/186 (97%), Gaps = 3/186 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcagccttcgatcgctactccacctatgagaaggtacaggaaaatctgggccagcc 64
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 gaattcagccttcgat-gctactccacctatgagaaggtacaggaaaatctgggccagcc 330

                                                                       
Query: 65  caagatcacttttgtcactggcctctgttca-aggctaggagatgatatccatggtcccc 123
           ||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct: 329 caagatcacttttgtcactggcctctgttcata-gctaggagatgatatccatggtcccc 271

                                                                       
Query: 124 agggaagaactcatggcacttggattaagaatcacaaggtacatggtgggctcaggagga 183
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 agggaagaattcatggcacttggattaagaatcacaaggtacatggtgggctcaggagga 211

                 
Query: 184 gaccag 189
           ||||||
Sbjct: 210 gaccag 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 531
Length of database: 930
Length adjustment: 10
Effective length of query: 521
Effective length of database: 920
Effective search space:   479320
Effective search space used:   479320
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |