Query= MSMg01no178_p08.b1 MSMg01no178_p08.b1 CHROMAT_FILE:
MSMg01no178_p08.b1 PHD_FILE: MSMg01no178_p08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:51:51 2005
(314 letters)
>mm_chr7_93516545_93517257
Length = 713
Score = 543 bits (281), Expect = e-159
Identities = 302/309 (97%), Gaps = 1/309 (0%)
Strand = Plus / Plus
Query: 5 gaattctctcactcctcttacccctctccctttgattcagtaagagaagttagaccatag 64
||||||||||||| |||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct: 205 gaattctctcacttctcttacccccctccctttgattcagtaagagaatttagaccatag 264
Query: 65 aattatatctcatataaaactagaagaatatttccaccttatccaaagctctaaaaatgt 124
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aattatatatcatataaaactagaagaatatttccaccttatccaaagctctaaaaatgt 324
Query: 125 acttgtggggttgtttctatgtgattttaaattttgtgaagtttctaaccaataatcacc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 acttgtggggttgtttctatgtgattttaaattttgtgaagtttctaaccaataatcacc 384
Query: 185 atcacagtattcctaatgtatttttgtcttaatcacttggactcagaaactttaggtagg 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 atcacagtattcctaatgtatttttgtcttaatcacttggactcagaaactttaggtagg 444
Query: 245 ggccatgacattaatctatataaatatttggtagtataaattaacagtgtgatctgataa 304
||| |||||||||||||| ||||||||||||||||||| |||||||||||||||||||||
Sbjct: 445 ggc-atgacattaatctaaataaatatttggtagtatagattaacagtgtgatctgataa 503
Query: 305 catttgttc 313
|||||||||
Sbjct: 504 catttgttc 512
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 713
Length adjustment: 9
Effective length of query: 305
Effective length of database: 704
Effective search space: 214720
Effective search space used: 214720
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no178_p08.g1 MSMg01no178_p08.g1 CHROMAT_FILE:
MSMg01no178_p08.g1 PHD_FILE: MSMg01no178_p08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:51:51 2005
(566 letters)
>mm_chr7_93685696_93686661
Length = 966
Score = 762 bits (394), Expect = 0.0
Identities = 550/680 (80%), Gaps = 118/680 (17%)
Strand = Plus / Minus
Query: 1 caggacagccagggctacacagagaaaccttgtctcaaaaaaacccaccaaaacaaaaca 60
|||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct: 950 caggacagccagggctacacagagaaaccttgtctcaaaaaaacaaaacaaaacaaaaca 891
Query: 61 aaacaaaaaaagatataatttcattaatttcacaatcaaccccatattactgagaattat 120
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 890 aaacaaaaaaagatataatttcattaatttcacaatcagccccatattactgagaattat 831
Query: 121 gaatgaccagttgatatatttggtatgtgcattcattaatcctttacaattaccagtgag 180
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 830 gaatgaccagttgatatatttggaatgtgcattcattaatcctttacaattaccagtgag 771
Query: 181 gcctttataaagataaggaaatatgattctaaagtctaatatgaatttaaagtcgactta 240
||||||||| || ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 770 gcctttatacaggtaaggaaatatgattctaaagtctaatataaatttaaagtcgactta 711
Query: 241 cagtgtataaaaa----------------------------------------------- 253
|||||||||||||
Sbjct: 710 cagtgtataaaaacatactagtatgtttatttttactattcaaactattttagtgataga 651
Query: 253 ------------------------------------------------------------ 253
Sbjct: 650 aactcactctacatagagaattatgttctacataaacattttatttgggacatagcaggc 591
Query: 254 -----------catcccagtctcctcactatcctcagcatgttgtcccttgtatcagtcc 302
|||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct: 590 acattgtccttcatcccagtctcctcactattctcagcatgttgtcccttgtctcagtcc 531
Query: 303 aactaccctccttcattcctccagtgtcccatctgatatttaagggtcttttgggattct 362
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 tactaccctccttcattcctccagtgtcccatctgatatttaagggtcttttgggattct 471
Query: 363 agaaaatgcaagttatggaaaacatgtatttatccctctatgtatttcttattttatttg 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 agaaaatgcaagttatggaaaacatgtatttatccctctatgtatttcttattttatttg 411
Query: 423 gtatgatgatttctatttgcatacatttttatcaaacaacataatttcattgcactttgt 482
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 410 gtatgatgatttctatttgcatccatttttatcaaacaacataatttcattgcactttgt 351
Query: 483 tattaaataaaattctattgttcatatataccatcttcttttccatgaattcattaactg 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 tattaaataaaattctattgttcatatataccatcttcttttccatgaattcattaactg 291
Query: 543 atgtctacggtggttccata 562
||||||||||||||||||||
Sbjct: 290 atgtctacggtggttccata 271
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 566
Length of database: 966
Length adjustment: 10
Effective length of query: 556
Effective length of database: 956
Effective search space: 531536
Effective search space used: 531536
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
