BAC Information

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BAC

Clone NameMSMg01-180B22
Chromosome7 (Build37)
Map Location 124,245,995 - 124,246,301
singlet/doubletsinglet
Overlap genenone
Upstream gene1110004F10Rik, Plekha7, Rps13, Pik3c2a, LOC100042798, Nucb2, LOC100043320, EG668484, LOC668485, LOC546993, LOC100043330
Downstream geneXylt1, LOC669758
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-180B22.T7 (MSMg01no180_b22.b1)MSMg01-180B22.TJ (MSMg01no180_b22.g1)
ACCAG373689AG373690
length801753
length of high quality
(start - end)
314 (32 - 345)291 (63 - 353)
definitionCHROMAT_FILE: MSMg01no180_b22.b1 PHD_FILE: MSMg01no180_b22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:53:17 2005CHROMAT_FILE: MSMg01no180_b22.g1 PHD_FILE: MSMg01no180_b22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:53:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCAACAAGTT
CTCACTGACAGAAGCCTGTATAGCTGTCTCCAGAAAGGCTCTTCCAGTGC
TTGACAAATACCGCAGGTGGATGCTCACAGCCATCCATTGGACAGAGCAC
AGGATCCCCAATATAGGAGGAACAACAATATGAATTAACTAGTATTCCCA
GAACTCCCAGGGACTAAATCATCAACAAAAGAGTACACATGGTGGGACTC
ATGGCTCCAGCTGCATATGTAGCAGAGGATGGCCTAGTCAGTCATCAATG
GGAGGAGAGGTTCTTGATCCTGTGAAGGCTCTCTGCCCCAGTATAGGGTA
ATGTCTGCACCTTATCGCAGATGTTGTTCGCCCCCACATATATCTTTTTT
TTTCCCCCCCCTTTTTTTCAAAATAATTGTTATTAATTTACACTTTAATT
TCCCCCGTCCCTTATGACATCCTTTACCTTTTTAAATGTTTTTCTCTATC
CTCGATAATGCCTAACACACTCAATTCCCAACTTTTTTTTCTAATACATA
TTACATTTATCCCCCTCTTTACAACGTATTTCGTTTTTCTACTCCTTTTT
TCCCCTCCTATCCCATCCAACCCATCTTCGACTTCTATTGACGATACACT
CTTTTATAATCGTCGGCCACCCGATCTTCTTACCTCTTTTTCTTTTTTTT
TACTCCACCTCTCTACCGCATTCCTCTATCTCCCTCACTATTTCTCTAGC
CTCAACATATACCCCACTTTTTCTAACTTCTGTCTAACATAACTATTCTC
C
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTTAATATCCTCAGAGTTCCACAATCATGTACACATTTG
TGCACCCTGACTCTACAGAACACACACACACACACACACACACACACACG
CATGCACGAACACACATGCACACAGTTGTGTGCAAGTCGCATACACATGA
AAAGAAGAAAGAGGAAAAATGGCCAGAATTTAACAATTTGTACTCTGCAA
AGTCACCTATCACTGGTTTCTTTCCTCCTTCCCTTCCTTCCTCCAAACTT
CCTTGTCATTCCAGTGGGGCTTAAGTAGTTACATTAGGCAGGGTTCTCTA
GAAATGCAGCATCAGCAATATATGCAGGCTGGTGGAGTTATTGGATGGTT
TTAGACCATGGTATCTGGATGAGGGAAGGGTAGAGAACCGAGTAGATGCT
CACTCTGAGAAACTGGCCACCTCTGCAATCATAATCTGAGGCTGAATGCC
TGTAAACTTCTTGGAGAGTGTGTGCCGCCAAATATCAATGTACAGTGCCT
ATAACCTCGCATTCTGAATTCAATAGATTACTTCTTCTAATAATAATCCC
TCCATAAAAAAATAAATTATACACCCACTACGGATTTATATCTACATCTT
CCTTTTCCTCTCCCAACCTTTTCTATCCCCTCTACTTACCTCCACCCCTC
CCTCCCTTCTATATAATCCCATAATCCTAACTCATTCTCTTTACTTCATC
CCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no180_b22.g1 MSMg01no180_b22.g1 CHROMAT_FILE:
MSMg01no180_b22.g1 PHD_FILE: MSMg01no180_b22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:53:17 2005
         (291 letters)



>mm_chr7_124245683_124246373
          Length = 691

 Score =  520 bits (269), Expect = e-152
 Identities = 290/307 (94%), Gaps = 16/307 (5%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttaatatcctcagagttccacaatcatgtacacatttgtgcaccctgactctacagaaca 60
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 619 ttaatatcctcagagttccacaatcatgtacacatttgtgcaccctgactatacagaaca 560

                                                                       
Query: 61  cacacacacacacacacacacacacac----------------gcatgcacgaacacaca 104
           |||||||||||||||||||||||||||                |||||||||||||||||
Sbjct: 559 cacacacacacacacacacacacacacacacacacacacacgtgcatgcacgaacacaca 500

                                                                       
Query: 105 tgcacacagttgtgtgcaagtcgcatacacatgaaaagaagaaagaggaaaaatggccag 164
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 tgcacacagttgtgtgcaagtcgcatacacatgaaaagaagaaagaggaaaaatggccag 440

                                                                       
Query: 165 aatttaacaatttgtactctgcaaagtcacctatcactggtttctttcctccttcccttc 224
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 aatttaacaatttgtactctgcaaagtcacctatcactggtttctttcctccttcccttc 380

                                                                       
Query: 225 cttcctccaaacttccttgtcattccagtggggcttaagtagttacattaggcagggttc 284
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 cttcctccaaacttccttgtcattccagtggggcttaagtagttacattaggcagggttc 320

                  
Query: 285 tctagaa 291
           |||||||
Sbjct: 319 tctagaa 313


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 11
Number of successful extensions: 10
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space:   192324
Effective search space used:   192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)