BAC Information

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BAC

Clone NameMSMg01-180N01
Chromosome7 (Build37)
Map Location 13,636,227 - 13,636,516
singlet/doubletsinglet
Overlap geneMzf1
Upstream geneLOC100043075, LOC100042433, V1rg7, LOC100042437, V1rg3, LOC100042446, LOC100043092, V1rg9, V1rg12, V1rg8, V1rg11, Zfp551, EG666065, Zfp606, 2900092C05Rik, EG637908, EG666085, Vmn2r55, LOC629079, LOC629081, EG232875, LOC100043128, LOC100042515, Zfp329, Zfp110, Zfp128, Zscan22, Rps5, 2310014L17Rik, 1810019N24Rik, Zfp324, Zfp446, Slc27a5, ZBTB45, LOC100042553, Trim28, Chmp2a, Ube2m
Downstream geneV1rj3, LOC100043156, V1rk1, LOC666177, EG232887, V1rj2, 6330408A02Rik, Lig1, Pla2g4c, LOC666225, Cabp5, LOC666232, Gm767, LOC666243, 9230107M04Rik, EG666256, LOC666267, LOC100042624, LOC100043194, Sult2a1, EG620627, EG434121
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-180N01.T7 (MSMg01no180_n01.b1)MSMg01-180N01.TJ (MSMg01no180_n01.g1)
ACCAG374185AG374186
length729735
length of high quality
(start - end)
690 (40 - 729)290 (68 - 357)
definitionCHROMAT_FILE: MSMg01no180_n01.b1 PHD_FILE: MSMg01no180_n01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:54:09 2005CHROMAT_FILE: MSMg01no180_n01.g1 PHD_FILE: MSMg01no180_n01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:54:09 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
CACCTGTACCATACCGAATGGCAGAGAAGCACCTGAAAAAATGCTCAACA
TCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTCCACCT
CACACCAGTCAGAATGGCTAAAATCAAAAATTCAGGTGACAGCAGATGCT
GGCGTGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGATTGC
AGGCTTGTACAACCACTATGGAAATCAGTCTGGCCGTTCCTCAGAAAACT
GGATATAGTACTACCGGAGGATCCAGCAATACCTCTCCTGGGCATATATC
CAGAAGATGCCCCAACTGGTAAGAAGGACACATGCTCCACTATGTTCATA
GCAGCCTTATTTATAATAGCCAGAAGCTGGAAGGAACCCAGATGCCCCTC
AACAGAGGAATGGATACAGAAAATGTGGTACATCTACACAATGGAGTACT
ACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGCCAAATGGATG
GACCTGGAGGGCATCATCCTGAGTGAGGTAACACATTCACAAAGGAACTC
ACACAATATGTACTCACTGATAAGTGGATATTAGCCCAAAACCTAAGATA
CCCAAGATATAAGATACAATTTCCTAAACACATGAAACTCAAGAAAAATG
AAGACTGAAGTGTGAACACTATGCCCCTN
GTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXACCAGGGAGAGGATGGAGGCATGGCTCAATAGC
AGAGTTCTTATCCATCATCCACTGGTGGGAAACTGGGGGTGTAGTTCAGT
GATAGGGTGCTTACCTAGCATGCACAATCCCTGAGGTCCAATAATGGAAA
AATAAACCATCTAATAAGGCCTAGACAGGTATGTTTCAGACCTGTAACCT
TACAGAGTTTTACTTCCCATAGTAGAATTCACAGGATGATGCATGCACAT
AAGGAAGTAAACCAAGAAAGACAGGAGCCTGGATGACCCGGCAGCATTCT
GGTTTGTCTTCAGTACGTGCNNCCCCCNTTNAAAGGTGGGTGGAAANNGG
GCNAAAAAAAAACATCTTTTTTTGTGGGGGCNCTNTTTTTGTATGTATTG
GTGTTCCCGTGTTCTGCTCCCAATTAAATTTCTATTTTCCACCCCTCCTC
CCCCGTTTCCTAACTGTATGTCTGTATCCTAACTCACATGATCGTTTTCT
TTCTTTCTTATTTAATATCCTAAAATTTTTTCTTTTTGTGGACCGTATTG
CTACAACAGTAGATCCCGCCTGTTTGTGTTTTACCTCCGTTTATTTCCCC
GATCTATCGACATTTTACTATTTTCCAACTATCATTCTCTCATCACTGAT
CTTTATAACTCCTCCCCCCTATTTATCATTCTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no180_n01.g1 MSMg01no180_n01.g1 CHROMAT_FILE:
MSMg01no180_n01.g1 PHD_FILE: MSMg01no180_n01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:54:09 2005
         (290 letters)



>mm_chr7_13636027_13636716
          Length = 690

 Score =  545 bits (282), Expect = e-160
 Identities = 288/290 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   accagggagaggatggaggcatggctcaatagcagagttcttatccatcatccactggtg 60
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 201 accagggagaggatggaggcatggctcaatagcagagttcttatccataatccactggtg 260

                                                                       
Query: 61  ggaaactgggggtgtagttcagtgatagggtgcttacctagcatgcacaatccctgaggt 120
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 261 ggaaactgggggtgtagttcagtgatagtgtgcttacctagcatgcacaatccctgaggt 320

                                                                       
Query: 121 ccaataatggaaaaataaaccatctaataaggcctagacaggtatgtttcagacctgtaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccaataatggaaaaataaaccatctaataaggcctagacaggtatgtttcagacctgtaa 380

                                                                       
Query: 181 ccttacagagttttacttcccatagtagaattcacaggatgatgcatgcacataaggaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccttacagagttttacttcccatagtagaattcacaggatgatgcatgcacataaggaag 440

                                                             
Query: 241 taaaccaagaaagacaggagcctggatgacccggcagcattctggtttgt 290
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 taaaccaagaaagacaggagcctggatgacccggcagcattctggtttgt 490


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space:   191361
Effective search space used:   191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)