BAC Information

Click to search

BAC

Clone NameMSMg01-181F02
Chromosome7 (Build37)
Map Location 123,519,129 - 123,519,334
singlet/doubletsinglet
Overlap genePik3c2a
Upstream geneSox6, LOC100042779, 1110006G14Rik, EG668479, LOC100043313, 1110004F10Rik, Plekha7, Rps13
Downstream geneLOC100042798, Nucb2, LOC100043320, EG668484, LOC668485, LOC546993, LOC100043330
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-181F02.T7 (MSMg01no181_f02.b1)MSMg01-181F02.TJ (MSMg01no181_f02.g1)
ACCAG374532AG374533
length797774
length of high quality
(start - end)
211 (76 - 286)288 (46 - 333)
definitionCHROMAT_FILE: MSMg01no181_f02.b1 PHD_FILE: MSMg01no181_f02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:54:45 2005CHROMAT_FILE: MSMg01no181_f02.g1 PHD_FILE: MSMg01no181_f02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:54:45 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAAATATTAGCAGTTGGTAGACTGTG
AGCTATTAAAGGGATATAGGGCCTGAATTCTAGTCCCATTACATTTTGTT
TCAAATTATGTTGATTCTAAAAGGCAGGCAGAAAAGCTCAGCAATCTTAA
GGTAATTCTTTTAAATAACATTTTTGTTTCTCAATTTCACTATATATTTT
CCTGTGTTTTTTGTTGTTGTTGTTGTTGTTTTTTGNCTTTCTCTGTTTTT
TGTTTAGTGCTGTTGTTTTTTTGTTTTTTTTTTGCNTCTCCGCCCCCCCT
TGCCCGGTGCTTTCTTTTCCTCTTTGCCCCCCCTGTTTTTTTTTCCCCCC
CCCCCCCCCCCCATTTTTTCCCCCCCTATGACCAGAAAAATAACCCCCTT
TTTTTTTTTTCCCCCCCACCCTTTTTTTTAGCCCCTCTTGTTTTTTGTTT
GATCCCTCTCTGTCATGCCACCTAATTGACCGACTTCCTATTTTCTCCCC
TTTTCCTCCACCCTCTTTTTTTCACACCCCCCCCCCTGTTTGTTTTTGTC
CCCTCCTTTTTTTGCCCCACCCTCCCTAGCCCTCTTCTTTTTATTATTCC
CCCCCCCCCCCTCCCCCCCCTTTTTTTTTTGTTTACACCTCATACGCTCC
CCCCTCTGCTTATTTGGCCTTTTTTTATCCCCGCCCCCCCCCCCCCCCCC
CCGTTTGTGTGATGGTTATAGTCTATCCATCCCAGCCTATTTACAGG
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCACATGTAGTCCAAACCAGCCTTGAACTAGTGGCAAGCCTCTTGC
TTCTGTCTCCTGACTGCTAGGATTACAGGCATGTGCCACCATCTCCCACC
TATTCTGGCTTTTTTTTTTTTTTTCCTCTATGTAACATCCCCAGCTGGAA
CTCACTCTGTAAACCAGGCTGGCCTTGAATTTAGAGATCTATCTGCCTTT
GCCTCTTCAGTGTTGGGATTAAAGGTGTGCACCACTATACCCAGCCTATT
CTGGTGTTTGTTTGGTTGGTTGGTTTGGTTTNNNNNNNNNCNNNNNNNNT
NNNNNNNNNNNTTTTTTTTTACCCCCCCCCCACCTAAAAAACTCATATAA
AATAAATCTTAGCCCCCCCCCCCCAAAAAAAAAAATATAATTTTTTTGTT
TTGCTTATCTTACTTCTCTACACCACAACATTATCTTTTTGTTTTTGTTT
TTATCTCCAATATAGCACGTTATACATAACATTTTTTTATATGATCATTT
CTTTCATCACACCCCACATTTTAGTCACCCAGCGACACTTATACTTACCA
CAACAATATTACCCTTATTATACAGATATATTATCTCTCCACAATATTAT
TATATATAAATACTTGCCTAAGCTATTTTATTTTACACCCCACCGTCCAC
TTTTTTTTTTTTATTAATTACACCACCAACTACTATATCAAAATCTGACA
AAGAATGAGATTAAATAATTGAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no181_f02.b1 MSMg01no181_f02.b1 CHROMAT_FILE:
MSMg01no181_f02.b1 PHD_FILE: MSMg01no181_f02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:54:45 2005
         (211 letters)



>mm_chr7_123518929_123519539
          Length = 611

 Score =  393 bits (203), Expect = e-114
 Identities = 206/207 (99%), Gaps = 1/207 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaatattagcagttggtagactgtgagctattaaagggatatagggcctgaattctagtc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaatattagcagttggtagactgtgagctattaaagggatatagggcctgaattctagtc 260

                                                                       
Query: 61  ccattacattttgtttcaaattatgttgattctaaaaggcaggcagaaaagctcagcaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccattacattttgtttcaaattatgttgattctaaaaggcaggcagaaaagctcagcaat 320

                                                                       
Query: 121 cttaaggtaattcttttaaataacatttttgtttctcaatttcactatatattttcctgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cttaaggtaattcttttaaataacatttttgtttctcaatttcactatatattttcctgt 380

                                      
Query: 181 gttttttgttgttgttgttgttgtttt 207
           |||||||||||||||||||||| ||||
Sbjct: 381 gttttttgttgttgttgttgtt-tttt 406


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 211
Length of database: 611
Length adjustment: 9
Effective length of query: 202
Effective length of database: 602
Effective search space:   121604
Effective search space used:   121604
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)