BAC Information

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BAC

Clone NameMSMg01-181I12
Chromosome7 (Build37)
Map Location 144,214,433 - 144,214,626
singlet/doubletsinglet
Overlap geneMgmt
Upstream geneLOC546009, EG621677, EG668771
Downstream geneEG621804, Ebf3, 9430038I01Rik, Txnl2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-181I12.T7 (MSMg01no181_i12.b1)MSMg01-181I12.TJ (MSMg01no181_i12.g1)
ACCAG374682AG374683
length720719
length of high quality
(start - end)
671 (43 - 713)285 (71 - 355)
definitionCHROMAT_FILE: MSMg01no181_i12.b1 PHD_FILE: MSMg01no181_i12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:55:00 2005CHROMAT_FILE: MSMg01no181_i12.g1 PHD_FILE: MSMg01no181_i12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:55:01 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTGCAGAGAATCCGCGGAA
TTCTACATTATTACCACCTGGCCCTGGGCTTTTTCTGGTTGGGAGGTTTT
TGATGGCTATTTCTATTTCCTTAGGGGTTATGGGACTATTTAGATAGTTT
ATCTTGATTTAACTTTGGTATGTGGTTTCTGTCTAGAAAATCATCCATTT
CATCTAGATTTTCCAGTTTTGTAGTATATACGCTTTTGTAGTAGGTTCTG
ATGATTTTTTGAATTTCCTCCGTTTTTTTTATTATCTTTCCCTTTTTATT
TCTGATTTTGTTAATTTGGATACTGTCTCTATGGTGTTTAGTTTGGCTAG
AGGTTTATCTATCTTGTTGATTTTCTCAAAAGAGCCAGTTCTTGGTTTTG
TTGATTCTTTGTATCCTTCTCTTTGTTTCTACCTGGTTGATTTCAGCTCT
GAGTTTGACTATTTCCTGCCATCAACTCCTCCTGGCCGTGTTTATTTCTT
TCTGTTCTAGAGCTTTCAGGTGTGCTTATGTGGGATCTCTGCAATTTCTT
TATGAAGGCTCTCAGTGCTATGAATTTTCCTCTTAAGATTGCTTTCATTG
TATCCCATAAGTTTAGGTATGATGTGTCTTCATTTTCATTGAATTCTATA
CAGTCCTTGATTTCTTTATTTCTTCCCCGACCAAGTTTTCATTGAGTGGA
GAGTTGTTTTGTTTCCATGN
TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTTGGCTGCAAAACTTGCTGCATTTGGTGCT
CTGGGGGAGGGGCTGGAAGCAGGAGCAGATTCTGCTTTATTCTGCGAGTT
TTTGGTTATGTTGTGAACCATTCCAGACGTCCTAGTCTCTCTGAAGAACA
TCACCCAGGTAAAATAAAGCCCACCACTGTTTTCAATAAAGGGGGCCACA
TGTTAGGGCACCTTTACCCAATAGAAACAGTCGCCAGAGTCTTTAAGCAT
GGCCTCATATCCAACATGGCCCATCTAGGATAGCATCTGACTTCCTGCTC
TCATTGTTTTCCTACCCCCCCACCGCCATATGAGGGTGGACCTCTGGCTC
TGTAACAGGCAAAGTTTGAGTAAACTGCGGTGGAGCCCATGAAAGCTACC
CTGACATCCTCCACAGCTGAGGATATGAGGAGGGGCAATCACTGCCACCA
CCACTCAGAGGACAGAGTGGACTGCACTTGGGGCCTTCTGAGAGGAGGGG
CTGAGGGAGCCCAATCTCATTCCTGCCACAGTACTGCCCTGCCTAACAGG
AGAGAAAGCACATCCTGCGGTGTGCTAGAGGGGTAAGGTGGTCAAGAGTT
CTCAGAGCAGCCAGGCGTGGTGGTGCAAGCCTTTAATCCCAGCACTCAGG
AGGCAGAGGCAGAGGCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no181_i12.g1 MSMg01no181_i12.g1 CHROMAT_FILE:
MSMg01no181_i12.g1 PHD_FILE: MSMg01no181_i12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:55:01 2005
         (285 letters)



>mm_chr7_144214073_144214757
          Length = 685

 Score =  195 bits (101), Expect = 2e-54
 Identities = 191/269 (71%), Gaps = 76/269 (28%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttggctgcaaaact-tgctgcatttggtgctctgggggaggggctggaagcaggagcaga 59
           |||||||||||| | ||||||||||||||||||||||||||||||       ||||||||
Sbjct: 554 ttggctgcaaaa-tgtgctgcatttggtgctctgggggaggggct-------ggagcaga 503

                                                                       
Query: 60  ttctgctttattctgcgagtttttggttatgttgtgaaccattccagacgtcctagtctc 119
           ||||||||||||||||||||||||||||||||||                          
Sbjct: 502 ttctgctttattctgcgagtttttggttatgttg-------------------------- 469

                                                                       
Query: 120 tctgaagaacatcacccaggtaaaataaagcccaccactgttttcaataaagggggccac 179
                                                    |||||||||||| ||||||
Sbjct: 468 -----------------------------------------tttcaataaaggaggccac 450

                                                                       
Query: 180 atgttagggcacctttacccaatagaaacagtcgccagagtctttaagcatggcctcata 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 atgttagggcacctttacccaatagaaacagtcgccagagtctttaagcatggcctcata 390

                                        
Query: 240 tccaacatggcccatctaggatagcatct 268
           ||||||||||||||||||||||| |||||
Sbjct: 389 tccaacatggcccatctaggatatcatct 361


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 685
Length adjustment: 9
Effective length of query: 276
Effective length of database: 676
Effective search space:   186576
Effective search space used:   186576
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)