MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-181J20
Chromosome	7 (Build37)
Map Location	130,004,437 - 130,004,940
singlet/doublet	singlet
Overlap gene	none
Upstream gene	Scnn1b, Cog7, Gga2, Ears2, Ubfd1, Ndufab1, Palb2, Dctn5, Plk1, Ern2, 2010110P09Rik, Prkcb1, LOC668486, Cacng3
Downstream gene	4930413G21Rik, Rbbp6, LOC628696, LOC100042977, LOC100042981, Tnrc6a, Slc5a11, Arhgap17, Lcmt1, Aqp8, Zkscan2, LOC100043482
Link	Open Mouse BAC browser

Click to get alignment info.

name	Scnn1b (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:20277 MGI:104696
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Cog7 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:233824 MGI:2685013
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Gga2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:74105 MGI:1921355
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ears2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:67417 MGI:1914667
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ubfd1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:28018 MGI:107301
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ndufab1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:70316 MGI:1917566
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Palb2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:233826 MGI:3040695
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Dctn5 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:59288 MGI:1891689
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Plk1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:18817 MGI:97621
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ern2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:26918 MGI:1349436
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	2010110P09Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:70261 MGI:1917511
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Prkcb1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:18751 MGI:97596
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC668486 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:668486
definition	note : acid phosphatase 1 pseudogene pseudo : _no_value

name	Cacng3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:54376 MGI:1859165
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	4930413G21Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:73951 MGI:1921201
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 3 ESTs

name	Rbbp6 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:19647 MGI:894835
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC628696 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:628696
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 15 ESTs, 8 Proteins pseudo : _no_value

name	LOC100042977 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042977
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins pseudo : _no_value

name	LOC100042981 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042981
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins pseudo : _no_value

name	Tnrc6a (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:233833 MGI:2385292
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Slc5a11 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:233836 MGI:1919316
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Arhgap17 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:70497 MGI:1917747
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Lcmt1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:30949 MGI:1353593
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Aqp8 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:11833 MGI:1195271
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Zkscan2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:210162 MGI:2444060
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100043482 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100043482
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 4 ESTs

name	Scnn1b (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6755411 GeneID:20277 MGI:104696
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : sodium channel, nonvoltage-gated 1 beta transcript_id : NM_011325.1

name	Cog7 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802214 GeneID:233824 MGI:2685013
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : component of oligomeric golgi complex 7 transcript_id : NM_001033318.3

name	Gga2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:131890064 GeneID:74105 MGI:1921355
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : golgi associated, gamma adaptin ear containing, ARF binding protein 2 transcript_id : NM_028758.2

name	Ears2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:29568091 GeneID:67417 MGI:1914667
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : glutamyl-tRNA synthetase 2 (mitochondrial)(putative) transcript_id : NM_026140.2

name	Ubfd1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:77917601 GeneID:28018 MGI:107301
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ubiquitin family domain containing 1 transcript_id : NM_138589.2

name	Ndufab1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802109 GeneID:70316 MGI:1917566
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1 transcript_id : NM_028177.3

name	Palb2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124486978 GeneID:233826 MGI:3040695
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : partner and localizer of BRCA2 transcript_id : NM_001081238.1

name	Dctn5 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31981210 GeneID:59288 MGI:1891689
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : dynactin 5 transcript_id : NM_021608.2

name	Plk1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:128485537 GeneID:18817 MGI:97621
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : polo-like kinase 1 (Drosophila) transcript_id : NM_011121.3

name	Ern2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124248582 GeneID:26918 MGI:1349436
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : endoplasmic reticulum (ER) to nucleus signalling 2 transcript_id : NM_012016.2

name	2010110P09Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:113931149 GeneID:70261 MGI:1917511
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 2010110P09 gene transcript_id : NM_027363.1

name	Prkcb1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:116734871 GeneID:18751 MGI:97596
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : protein kinase C, beta 1 transcript_id : NM_008855.2

name	Cacng3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:9506452 GeneID:54376 MGI:1859165
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : calcium channel, voltage-dependent, gamma subunit 3 transcript_id : NM_019430.1

name	4930413G21Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149257705 GeneID:73951 MGI:1921201
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 3 ESTs product : RIKEN cDNA 4930413G21 gene transcript_id : XM_001479210.1

name	Rbbp6 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141801782 GeneID:19647 MGI:894835
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : retinoblastoma binding protein 6 transcript_id : NM_175023.2

name	Tnrc6a (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:117190551 GeneID:233833 MGI:2385292
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : trinucleotide repeat containing 6a transcript_id : NM_144925.3

name	Slc5a11 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130211 GeneID:233836 MGI:1919316
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : solute carrier family 5 (sodium/glucose cotransporter), member 11 transcript_id : NM_146198.2

name	Arhgap17 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:21362322 GeneID:70497 MGI:1917747
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : Rho GTPase activating protein 17 transcript_id : NM_144529.1

name	Lcmt1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:42794772 GeneID:30949 MGI:1353593
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : leucine carboxyl methyltransferase 1 transcript_id : NM_025304.3

name	Aqp8 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6680713 GeneID:11833 MGI:1195271
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : aquaporin 8 transcript_id : NM_007474.1

name	Zkscan2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124486744 GeneID:210162 MGI:2444060
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : zinc finger with KRAB and SCAN domains 2 transcript_id : NM_001081329.1

name	LOC100043482 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149257776 GeneID:100043482
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 4 ESTs product : similar to Moca-cyp CG1866-PB transcript_id : XM_001480057.1

name	Scnn1b (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6755412 CCDS:CCDS21804.1 GeneID:20277 MGI:104696
definition	GO_component : GO:0016021 - integral to membrane [Evidence IDA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0015280 - amiloride-sensitive sodium channel activity [Evidence IDA]; GO:0005216 - ion channel activity [Evidence IEA]; GO:0005272 - sodium channel activity [Evidence IEA]; GO:0031402 - sodium ion binding [Evidence IEA] GO_process : GO:0006811 - ion transport [Evidence IEA]; GO:0050896 - response to stimulus [Evidence IEA]; GO:0006814 - sodium ion transport [Evidence IDA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 note : ENaC beta product : sodium channel, nonvoltage-gated 1 beta protein_id : NP_035455.1

name	Cog7 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:110625631 CCDS:CCDS21805.1 GeneID:233824 MGI:2685013
definition	GO_component : GO:0005794 - Golgi apparatus [Evidence ISS] GO_function : GO:0003674 - molecular_function [Evidence ND] GO_process : GO:0008150 - biological_process [Evidence ND] codon_start : 1 product : component of oligomeric golgi complex 7 protein_id : NP_001028490.2

name	Gga2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:58037347 GeneID:74105 MGI:1921355
definition	GO_component : GO:0030130 - clathrin coat of trans-Golgi network vesicle [Evidence IEA]; GO:0005802 - Golgi trans face [Evidence ISS]; GO:0005622 - intracellular [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0030306 - ADP-ribosylation factor binding [Evidence ISS] GO_process : GO:0008150 - biological_process [Evidence ND]; GO:0006886 - intracellular protein transport [Evidence IEA]; GO:0006461 - protein complex assembly [Evidence IEA]; GO:0015031 - protein transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 product : golgi associated, gamma adaptin ear containing, ARF binding protein 2 protein_id : NP_083034.1

name	Ears2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21312986 CCDS:CCDS21807.1 GeneID:67417 MGI:1914667
definition	GO_component : GO:0017101 - aminoacyl-tRNA synthetase multienzyme complex [Evidence IEA]; GO:0005737 - cytoplasm [Evidence IEA] GO_function : GO:0004812 - aminoacyl-tRNA ligase activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0004818 - glutamate-tRNA ligase activity [Evidence IEA]; GO:0016874 - ligase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA] GO_process : GO:0006424 - glutamyl-tRNA aminoacylation [Evidence IEA]; GO:0006412 - protein biosynthesis [Evidence IEA] codon_start : 1 product : glutamyl-tRNA synthetase 2 (mitochondrial)(putative) protein_id : NP_080416.1

name	Ubfd1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:77917602 CCDS:CCDS21808.1 GeneID:28018 MGI:107301
definition	GO_process : GO:0006464 - protein modification [Evidence IEA] codon_start : 1 product : ubiquitin-binding protein homolog protein_id : NP_613055.2

name	Ndufab1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:27754007 CCDS:CCDS21809.1 GeneID:70316 MGI:1917566
definition	GO_component : GO:0005739 - mitochondrion [Evidence IDA] GO_function : GO:0000036 - acyl carrier activity [Evidence IEA]; GO:0048037 - cofactor binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]; GO:0031177 - phosphopantetheine binding [Evidence IEA] GO_process : GO:0006633 - fatty acid biosynthesis [Evidence IEA]; GO:0008610 - lipid biosynthesis [Evidence IEA] codon_start : 1 product : NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1 protein_id : NP_082453.2

name	Palb2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124486979 GeneID:233826 MGI:3040695
definition	codon_start : 1 product : partner and localizer of BRCA2 protein_id : NP_001074707.1

name	Dctn5 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31981211 CCDS:CCDS21811.1 GeneID:59288 MGI:1891689
definition	GO_component : GO:0005856 - cytoskeleton [Evidence IEA]; GO:0005869 - dynactin complex [Evidence ISS] GO_function : GO:0008415 - acyltransferase activity [Evidence IEA] codon_start : 1 exception : mismatches in translation note : p25 dynactin subunit; dynactin 4 product : dynactin 5 protein_id : NP_067621.2

name	Plk1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:128485538 CCDS:CCDS21812.1 GeneID:18817 MGI:97621
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]; GO:0004672 - protein kinase activity [Evidence IEA]; GO:0004674 - protein serine/threonine kinase activity [Evidence IEA] [Evidence ISS]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0008283 - cell proliferation [Evidence ISS]; GO:0007067 - mitosis [Evidence ISS]; GO:0006468 - protein amino acid phosphorylation [Evidence IEA]; GO:0000074 - regulation of progression through cell cycle [Evidence ISS] codon_start : 1 note : polo-like kinase homolog product : polo-like kinase protein_id : NP_035251.3

name	Ern2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124248583 CCDS:CCDS21813.1 GeneID:26918 MGI:1349436
definition	GO_component : GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005524 - ATP binding [Evidence IEA] [Evidence ISS]; GO:0003824 - catalytic activity [Evidence IEA]; GO:0016891 - endoribonuclease activity, producing 5'-phosphomonoesters [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence ISS] [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0004674 - protein serine/threonine kinase activity [Evidence ISS] [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0006915 - apoptosis [Evidence IEA]; GO:0007050 - cell cycle arrest [Evidence IDA]; GO:0006917 - induction of apoptosis [Evidence IDA]; GO:0006397 - mRNA processing [Evidence IEA]; GO:0006468 - protein amino acid phosphorylation [Evidence ISS]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006950 - response to stress [Evidence IMP]; GO:0006986 - response to unfolded protein [Evidence IEA]; GO:0006350 - transcription [Evidence IEA]; GO:0006987 - unfolded protein response, activation of signaling protein activity [Evidence ISS] codon_start : 1 note : inositol-requiring 1 (Yeast homologue); inositol-requiring 1 beta product : endoplasmic reticulum (ER) to nucleus signalling 2 protein_id : NP_036146.2

name	2010110P09Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:113931150 CCDS:CCDS21814.1 GeneID:70261 MGI:1917511
definition	GO_component : GO:0005886 - plasma membrane [Evidence ISS] GO_function : GO:0005509 - calcium ion binding [Evidence IEA]; GO:0005515 - protein binding [Evidence ISS] GO_process : GO:0006885 - regulation of pH [Evidence ISS]; GO:0006814 - sodium ion transport [Evidence ISS] codon_start : 1 product : calcineurin B homologous protein 2 protein_id : NP_081639.1

name	Prkcb1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6679345 CCDS:CCDS21815.1 GeneID:18751 MGI:97596
definition	GO_component : GO:0005737 - cytoplasm [Evidence IDA]; GO:0016020 - membrane [Evidence IEA]; GO:0005634 - nucleus [Evidence IDA] GO_function : GO:0005246 - calcium channel regulator activity [Evidence IDA]; GO:0019992 - diacylglycerol binding [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0004697 - protein kinase C activity [Evidence IDA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0006874 - calcium ion homeostasis [Evidence IDA]; GO:0006816 - calcium ion transport [Evidence IDA]; GO:0006468 - protein amino acid phosphorylation [Evidence IDA] codon_start : 1 note : protein kinase C beta-II product : protein kinase C, beta 1 protein_id : NP_032881.1

name	Cacng3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:9506453 CCDS:CCDS21816.1 GeneID:54376 MGI:1859165
definition	GO_component : GO:0016020 - membrane [Evidence IEA]; GO:0005923 - tight junction [Evidence IEA] GO_function : GO:0005262 - calcium channel activity [Evidence IEA]; GO:0005509 - calcium ion binding [Evidence IEA]; GO:0005216 - ion channel activity [Evidence IEA]; GO:0005198 - structural molecule activity [Evidence IEA]; GO:0005244 - voltage-gated ion channel activity [Evidence IEA] GO_process : GO:0006811 - ion transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 exception : mismatches in translation product : voltage-dependent calcium channel gamma-3 subunit protein_id : NP_062303.1

name	4930413G21Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149257706 GeneID:73951 MGI:1921201
definition	codon_start : 1 product : hypothetical protein LOC73951 protein_id : XP_001479260.1

name	Rbbp6 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:27923919 CCDS:CCDS21817.1 GeneID:19647 MGI:894835
definition	GO_component : GO:0005575 - cellular_component [Evidence ND]; GO:0005634 - nucleus [Evidence IEA]; GO:0000151 - ubiquitin ligase complex [Evidence IEA] GO_function : GO:0046872 - metal ion binding [Evidence IEA]; GO:0003674 - molecular_function [Evidence ND]; GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]; GO:0004842 - ubiquitin-protein ligase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0008150 - biological_process [Evidence ND]; GO:0016567 - protein ubiquitination [Evidence IEA] codon_start : 1 note : isoform 2 is encoded by transcript variant 2; proliferation potential-related protein; p53-associated cellular protein of testis product : retinoblastoma binding protein 6 isoform 2 protein_id : NP_778188.1

name	Tnrc6a (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:117190552 GeneID:233833 MGI:2385292
definition	GO_function : GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA] codon_start : 1 note : GW182 autoantigen product : trinucleotide repeat containing 6A protein_id : NP_659174.3

name	Slc5a11 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:22122753 CCDS:CCDS21819.1 GeneID:233836 MGI:1919316
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA] GO_process : GO:0006811 - ion transport [Evidence IEA]; GO:0006814 - sodium ion transport [Evidence IEA] codon_start : 1 note : sodium-coupled cotransporter KST1; sodium/myo-inositol cotransporter 2; solute carrier family 5 (sodium/glucose cotransporter), member 10 product : sodium/glucose cotransporter KST1 protein_id : NP_666310.1

name	Arhgap17 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21362323 GeneID:70497 MGI:1917747
definition	GO_component : GO:0005737 - cytoplasm [Evidence ISS] [Evidence IEA]; GO:0005626 - insoluble fraction [Evidence ISS]; GO:0005622 - intracellular [Evidence IEA] GO_function : GO:0005515 - protein binding [Evidence IEA] GO_process : GO:0007015 - actin filament organization [Evidence ISS]; GO:0017156 - calcium ion-dependent exocytosis [Evidence ISS]; GO:0007165 - signal transduction [Evidence IEA] codon_start : 1 exception : mismatches in translation note : neuron-associated developmentally regulated protein; WW domain-binding protein 15 product : nadrin protein_id : NP_653112.1

name	Lcmt1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:42794773 GeneID:30949 MGI:1353593
definition	GO_component : GO:0005575 - cellular_component [Evidence ND] GO_function : GO:0003880 - C-terminal protein carboxyl methyltransferase activity [Evidence ISS]; GO:0008168 - methyltransferase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0006481 - C-terminal protein amino acid methylation [Evidence ISS] codon_start : 1 product : leucine carboxyl methyltransferase 1 protein_id : NP_079580.2

name	Aqp8 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6680714 GeneID:11833 MGI:1195271
definition	GO_component : GO:0005887 - integral to plasma membrane [Evidence TAS]; GO:0016020 - membrane [Evidence IEA]; GO:0019867 - outer membrane [Evidence IEA] GO_function : GO:0015288 - porin activity [Evidence IEA]; GO:0005215 - transporter activity [Evidence IEA]; GO:0015250 - water channel activity [Evidence TAS] GO_process : GO:0006810 - transport [Evidence IEA]; GO:0006833 - water transport [Evidence TAS] codon_start : 1 product : aquaporin 8 protein_id : NP_031500.1

name	Zkscan2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124486745 GeneID:210162 MGI:2444060
definition	GO_component : GO:0005622 - intracellular [Evidence IEA]; GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0046872 - metal ion binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] codon_start : 1 product : zinc finger protein 694 protein_id : NP_001074798.1

name	LOC100043482 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149257777 GeneID:100043482
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001480107.1

name	LOC100042977 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100042977
definition	number : 1 pseudo : _no_value

name	LOC100042977 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100042977
definition	number : 2 pseudo : _no_value

name	LOC100042981 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100042981
definition	number : 1 pseudo : _no_value

name	LOC100042981 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100042981
definition	number : 2 pseudo : _no_value

name	LOC628696 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149257775 GeneID:628696
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 15 ESTs, 8 Proteins product : similar to ribosomal protein L11 pseudo : _no_value transcript_id : XR_034502.1

clone name	MSMg01-158M05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-177N15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-189F17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-520N15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-447L07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-067A14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-196N05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-330E09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-116M13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-293O02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-295J20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-184C08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-333F14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-493K20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-431I14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-388P21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-179E20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-525I14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-481C19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-180O04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-335O13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-368G02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-351E21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-197J03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-458O02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-175I24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-375O18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-302L09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-102D05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-137N11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-305I06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-397N21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-321M22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-472A22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-231N13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-292I22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-499A06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-371F08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-506F22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-319N05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-477N20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-505B24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-359L15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-449K10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-181J20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-448I08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-520C14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-480M12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-486G23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-344O12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-343J03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-453J11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-453P20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-504E01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-301I08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-536N20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-261M17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-197H20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-130B04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-343J04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-366H02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-392H13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-198K18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-361N20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-261L22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-148C01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-122F08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-541F24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-424I05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-517D20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-387H21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-329P16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-306A04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-097F07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-129A24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-188I01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-110L21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-534P04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-051E08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-316L20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-244C03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-194E07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-102A13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-332G18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-097L13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-160J18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-248O13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-294K21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-082O23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-344F10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-261P04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-198K01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-243C15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-310N14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-199B15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-105K22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-168K04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-166J12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-269H13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-247P06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-160F11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-198D11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-126K16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-050C05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-169L05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-307H24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-079L11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-128G05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-034N20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-251A10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-186K05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-190O11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-028C13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-274I21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-256C22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-327P15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-175G14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-099E05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-227O20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-084C07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-307E02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-090K15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-090K19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-032J24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-310K07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-070N16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-019P21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-204A23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-302P20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-290A22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-303M20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-103D11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-220G16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-063C16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-109M11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-004B07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-060H17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-329M15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-252K18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-125D03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-332M19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-216F22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-342L13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-204K16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-119A10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-234K17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-118C19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-061J03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-010M23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-263O11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-292J01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-204J02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-030N01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-268A20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-324M07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-344P12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-024K01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-134G22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-028G15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-060F07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-126H05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-183D14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-318D06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-316M17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-081I02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-282A16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-332J12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-120E09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-194P09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-262K17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-280P09
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-181J20.T7 (MSMg01no181_j20.b1)	MSMg01-181J20.TJ (MSMg01no181_j20.g1)
ACC	AG374738	AG374739
length	809	738
length of high quality (start - end)	49 (66 - 114)	533 (75 - 607)
definition	CHROMAT_FILE: MSMg01no181_j20.b1 PHD_FILE: MSMg01no181_j20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:55:07 2005	CHROMAT_FILE: MSMg01no181_j20.g1 PHD_FILE: MSMg01no181_j20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:55:07 2005
singlet/doublet	---	singlet
BLAST hit	no hit data	unique
sequence	CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXTTCTGGAATTCTATGGGGCCGGGGATGTGGAATGG GGTGGGGAGATNTNNNTTTTTTTCCCCTTTTTNCCCCCCCTTACCCCTTT TTTTTTCCCCCTTTTTTTTTTTTTTTCTCTCCCCCCCTTTCCCCCCCCCC TCTCCCTCCTTCCTCCTTATTTCCCTTTATTTCTACCCTTTCAGTTTTTC AATCCCCCTTATCTCTTATCCCTTATACCCCCCCCTCTCTTTCCCCACTT ACATTAATTACTTTTCTTCATAATTTTTTTTTTTTTTCATCCACCCACAC CCTTTTTCAATTACTTTTTTTTTCTCCCCCCCCCCCCCCTTTTTTTTTAT TTTTCCTCTTCTTTTTTCCCTTTTCCCCCCCCCCATAACAAAAATTTTCC CCCCCCTTTTTTTTTTTCCCCCCCCCCTTTTTTTTTACCTTAAATTTTTA TAATTTTTGCGGTGGTCTCTTCCTCTTCTTCACCCCTTTCCTTTTTTTCT CCCTTTTTCTCCCCCCTTTTTATTTTCTACTCCCCCCCTTTTTTTTTTTT TCCCCCCTTTTTTCCTCACTCACTCTTATCATAATATTCTTATTTTTTTT TTTTTCTCCCCCCCCCCCCCCCCCCCCTTTTTTTTTTTTTTTATACATCC TTCCTACCCCCACATCCTTTTTTTTTCCCTTTTTTTTACTACAAAACCCT CACCGCCCCCGTATTATTTACTGTCATTATATGTATTACATATCCTCCAT ATTTACAAA	TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG AATTCTTTCTTTGTGACAGAAGATTAGATTTCACTCAACGCACATCCATT ACACTAAGATAGGATCATCCTTCTTGGGATCACAATCAAGAGAGCGCTAG GTGCAAGAGGCCAACTCTCTCTGTCTCTCTGTCTCTCTCTCTGTCTCTCT CTCTCTCTGTCTCTCTCTGTCTCTCTCTCTGTCTCTCTCTCTGTCTCTCT CTCTCTGTCTCTCTCTGTCTCTCTCTCTCTGTCTCTCTCTCTCTCTCTCT GTGTCTCTTCCCTTCCCTTCCCTCCAACCCACTCTTTCTTATATCTCTCC AGAGTCTCACTATATAACTCTAGCTGGGTTGAAACTCAATATTTAGACTA GGCTAGCCTTAAAGCCACACACGCCCACATGTGTCTGGCTCTTGAGTTCT GGGATTAAAGGTGACGAACATTACAGCAGGCTGCCTGCAGTTCCTGTTCC CTTTATTTAAAGACACTAATTCCAGGTTTCCAGAACAATGCAACAAGATG ACTTTTTTTTTCCAAAATAAATTGAGATGATAGAGAATGGCCAAATGGAC AGTAAGAGACCAGGGTCTGCTGTCTTCCCACCTCCACCCCAACCCCAGCT AAGGATGTTCAGCACACTCTAAGGCCCAGGTCACAGCTAAGAGCCACACT AATGAGTATGATAGGCTAGCCAGTGCGGGGAAAAGTCN
quality values	Open. Hide. 6 6 6 14 14 10 11 10 10 23 19 27 27 28 37 37 37 50 50 50 50 53 50 50 44 44 39 37 37 37 28 23 12 6 6 6 6 6 14 11 14 18 27 22 40 43 48 48 47 53 53 50 47 53 41 41 37 37 42 41 43 32 21 15 11 9 9 9 9 9 18 19 30 30 33 33 59 50 50 53 53 57 57 59 59 59 53 37 37 40 40 37 42 57 50 50 53 53 50 47 48 59 41 59 46 39 37 28 14 12 3 0 3 0 0 0 3 10 8 9 9 9 9 12 17 13 11 11 10 13 10 3 0 3 8 8 8 10 12 12 10 10 9 9 8 9 10 10 15 17 15 18 18 18 18 20 22 16 18 12 10 10 9 9 9 9 15 10 8 8 8 15 17 16 14 8 8 8 8 7 7 8 8 10 10 10 12 12 10 10 9 12 14 18 19 9 9 11 12 10 8 8 8 10 8 8 8 8 15 13 12 10 8 8 8 10 12 10 12 15 8 8 8 8 8 8 19 13 13 10 10 9 8 8 6 6 8 6 6 8 8 8 9 9 9 12 16 24 18 17 11 10 10 10 11 18 10 9 8 8 8 6 6 7 6 6 8 6 7 8 10 8 8 8 8 8 8 12 19 15 19 10 10 10 10 10 8 8 8 8 8 8 8 10 8 8 8 8 11 6 6 6 6 6 6 9 11 11 11 11 11 12 12 10 8 8 8 6 6 6 6 8 8 8 10 12 12 18 30 37 37 37 34 24 19 14 12 12 12 11 12 9 9 8 10 8 8 8 6 6 8 6 6 6 8 10 10 12 11 11 11 13 10 11 12 15 15 12 14 19 22 21 10 10 11 12 21 28 20 22 24 18 20 23 24 28 22 20 16 13 9 8 8 8 12 12 18 11 11 11 21 15 25 18 17 11 11 10 10 10 10 12 12 14 16 16 19 17 12 8 8 8 8 8 9 10 17 24 26 28 24 14 10 10 10 10 8 8 6 6 8 8 9 9 10 13 10 10 10 10 10 9 11 14 19 12 15 24 31 33 26 37 37 23 19 11 12 10 10 10 10 15 17 18 18 11 11 10 15 12 15 10 11 12 10 10 10 10 8 8 8 8 8 8 9 9 10 11 12 17 9 9 8 8 16 13 10 8 8 8 8 8 8 8 8 8 10 9 12 19 24 15 10 9 9 9 9 9 8 8 8 8 8 9 11 10 10 10 10 11 14 12 17 18 15 14 10 10 10 17 17 18 22 28 24 27 14 9 9 9 9 11 14 24 16 18 20 14 11 8 8 8 8 13 10 8 8 6 6 10 11 11 12 12 12 13 17 17 20 25 22 24 23 21 12 12 11 11 8 8 8 8 10 14 18 15 15 15 16 16 22 16 10 10 10 8 8 8 6 6 6 6 8 8 8 8 8 8 9 11 12 10 8 8 8 8 8 8 8 10 8 8 8 8 16 10 9 9 9 9 9 9 17 22 14 14 18 13 8 8 9 19 19 30 30 30 20 16 9 9 9 13 15 19 18 9 9 9 9 9 21 23 19 16 16 19 23 19 16 17 8 8 8 8 8 6 6 8 8 8 9 10 15 10 10 8 10 8 8 11 10 10 8 8 8 8 8 8 12 9 9 12 19 13 15 9 8 9 8 8 11 9 10 12 24 7 7 7 6 8 8 8 9 11 11 11 11 15 13 8 8 8 8 8 8 8 8 14 9 9 9 8 8 8 8 8 8 12 10 8 8 8 8 8 9 9 9 10 8 8 6 6 6 8 8 8 8 9 9 9 8 8 8 8 8 8 9 9 9 10 9 8 10 6 6 8 8 8 6	Open. Hide. 8 10 8 8 8 8 10 15 31 28 33 32 32 28 28 37 37 37 37 37 41 37 44 44 48 30 28 28 28 25 21 21 11 11 11 17 12 11 11 12 10 10 10 14 15 22 34 47 47 31 31 31 31 36 33 50 50 59 59 59 30 19 13 10 9 9 10 11 11 17 18 23 14 14 14 22 25 36 36 36 36 36 36 38 50 57 57 57 57 53 47 47 47 47 47 47 68 68 68 51 51 51 51 47 47 68 68 68 68 68 68 68 68 68 68 50 50 51 51 68 68 57 57 57 57 44 37 37 42 48 50 50 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 59 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 59 59 59 59 59 68 68 68 59 59 59 59 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 59 59 59 59 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 57 44 43 43 37 37 41 50 50 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 59 54 54 54 48 48 48 48 59 59 59 68 68 68 68 68 59 59 59 59 59 59 57 57 57 57 57 57 59 59 59 59 59 59 59 59 59 59 59 59 59 39 37 18 11 7 8 8 8 8 8 8 8 8 8 21 23 47 47 59 47 48 59 59 59 59 59 57 59 57 59 59 59 59 59 59 59 59 59 59 57 57 57 54 57 57 68 68 59 59 59 57 57 54 54 54 57 54 54 54 57 57 54 48 48 48 57 57 57 54 59 59 48 48 54 59 59 59 59 59 59 54 59 59 59 57 57 57 59 57 57 57 54 54 54 48 48 57 57 57 57 57 48 48 48 59 57 50 48 48 48 48 48 43 43 43 40 59 40 39 39 39 35 27 25 32 37 37 37 41 41 40 43 43 48 48 48 48 48 57 48 48 48 59 59 59 59 59 57 57 32 32 22 22 22 31 34 57 47 47 37 37 28 30 25 34 34 17 15 9 9 9 17 23 23 24 12 11 11 18 23 37 37 37 39 38 31 31 32 32 32 39 30 30 14 14 15 27 23 23 23 23 19 15 14 16 14 19 19 23 23 15 13 6 6 6 11 15 29 25 28 28 37 37 39 39 34 34 30 24 24 28 24 28 33 30 26 26 26 12 19 12 13 13 18 13 15 15 19 20 12 11 16 18 30 23 30 33 30 27 22 14 12 11 9 8 10 10 8 8 8 8 8 15 16 15 15 18 21 11 10 10 13 10 10 10 19 10 12 12 16 17 17 18 10 11 11 11 11 10 13 17 16 21 21 15 10 8 8 8 8 12 13 16 11 10 10 9 12 10 10 10 10 8 8 8 3 0

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no181_j20.g1 MSMg01no181_j20.g1 CHROMAT_FILE:
MSMg01no181_j20.g1 PHD_FILE: MSMg01no181_j20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:55:07 2005
         (533 letters)



>mm_chr7_130004207_130005140
          Length = 934

 Score =  789 bits (408), Expect = 0.0
 Identities = 490/536 (91%), Gaps = 35/536 (6%)
 Strand = Plus / Plus

                                                                       
Query: 1   tagatttcactcaacgcacatccattacactaagataggatcatccttcttgggatcaca 60
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 231 tagatttcactcaacgcacgtccattacactaagataggatcatccttcttgggatcaca 290

                                                                       
Query: 61  atcaagagagcgctaggtgcaagaggccaactctctctgtctctctgtctctctctctgt 120
           |||||||||||| |||||||||||||||||||||||||            ||||||||||
Sbjct: 291 atcaagagagcgataggtgcaagaggccaactctctct------------ctctctctgt 338

                                                                       
Query: 121 ctctctctctctctgtctctctctgtctctctctctgtctctctctctgtctctctctct 180
           ||||||||||||  ||||||||||||||||      ||||||||||||      ||||||
Sbjct: 339 ctctctctctct--gtctctctctgtctct------gtctctctctct------ctctct 384

                                                                       
Query: 181 ctgtctctctctgtctctctctctctgtctctctctctctctctctgtgt--ctcttccc 238
           ||||||||||||      |||||||||||||||||||| | | | |||||  ||||||||
Sbjct: 385 ctgtctctctct------ctctctctgtctctctctctgtgtgtgtgtgtgtctcttccc 438

                                                                       
Query: 239 ttcccttccctccaacccactctttcttatatctctccagagtctcactatataactcta 298
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 ttcccttccctccaacccactctttcttatatctctccagagtctcactatataactcta 498

                                                                       
Query: 299 gctgggttgaaactcaatatttagactaggctagccttaaagccacacacgcccacatgt 358
           |||||||||||||||||||||||||||||||||||||||||| |||| | | ||||||||
Sbjct: 499 gctgggttgaaactcaatatttagactaggctagccttaaagtcacagatgtccacatgt 558

                                                                       
Query: 359 gtctggctcttgagttctgggattaaaggtgacgaacattacagcaggctgcctgcagtt 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 gtctggctcttgagttctgggattaaaggtgacgaacattacagcaggctgcctgcagtt 618

                                                                       
Query: 419 cctgttccctttatttaaagacactaattccaggtttccagaacaatgcaacaagatgac 478
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 619 cctgttccctttatttaaagacactaactccaggtttccagaacaatgcaacaagatgac 678

                                                                   
Query: 479 tttttttttcc-aaaataaattgagatgatagagaatggccaaatggacagtaaga 533
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 tttttttttcccaaaataaattgagatgatagagaatggccaaatggacagtaaga 734


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 75
Number of extensions: 7
Number of successful extensions: 7
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 1
Length of query: 533
Length of database: 934
Length adjustment: 10
Effective length of query: 523
Effective length of database: 924
Effective search space:   483252
Effective search space used:   483252
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information