Query= MSMg01no181_n17.b1 MSMg01no181_n17.b1 CHROMAT_FILE:
MSMg01no181_n17.b1 PHD_FILE: MSMg01no181_n17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:55:26 2005
(245 letters)
>mm_chr7_98223567_98224211
Length = 645
Score = 462 bits (239), Expect = e-135
Identities = 242/243 (99%)
Strand = Plus / Minus
Query: 1 tagcattcattgtgattatatacaaaagatttaattcttttgattcttacttactttata 60
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 300 tagcattcattgtgattatatacaaaagatttaattcttttgattcttatttactttata 241
Query: 61 tgaatgaattggaagttttgatccctacctagctttcaggaaaataatgaataaatatta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 tgaatgaattggaagttttgatccctacctagctttcaggaaaataatgaataaatatta 181
Query: 121 agataatataaatataagcacctactataaagtagtcactgttccttaagtcgggctcct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 180 agataatataaatataagcacctactataaagtagtcactgttccttaagtcgggctcct 121
Query: 181 ttctcctttatttcatacactgagggacatatatgttttacaatgcaggagtaatcatac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120 ttctcctttatttcatacactgagggacatatatgttttacaatgcaggagtaatcatac 61
Query: 241 ctg 243
|||
Sbjct: 60 ctg 58
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space: 150096
Effective search space used: 150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no181_n17.g1 MSMg01no181_n17.g1 CHROMAT_FILE:
MSMg01no181_n17.g1 PHD_FILE: MSMg01no181_n17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:55:26 2005
(668 letters)
>mm_chr7_98151489_98152556
Length = 1068
Score = 990 bits (512), Expect = 0.0
Identities = 573/614 (93%), Gaps = 32/614 (5%)
Strand = Plus / Plus
Query: 55 aaaaagcaaggcccaacagtgtacttgcaaccccaggtctgagaaggcaaagcaaacatc 114
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 aaaaagcaaggcccaacagtgtacttgcaaccccaggtctgagaaggcaaagcaaacatc 314
Query: 115 cgtggagatggttggcagctagtctggctgagccagtgacttctagtcactgagagatcc 174
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 cgtggagatggttggcagctagtctggctgagccagtgacttctagtcactgagagatcc 374
Query: 175 tgtcccaagaaatatagcagaggtaatctgcaaaagactccatgttgaactctggtgttt 234
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 tgtcccaagaaatacagcagaggtaatctgcaaaagactccatgttgaactctggtgttt 434
Query: 235 atgcgaagaagcacatacacacatgcacgtaccaggacatccagctacacacacacacac 294
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 atgcgaagaagcacatacacacatgcacgtaccaggacatccagct-------------- 480
Query: 295 acacacacacacacacacacacacacacacacacacacacacacacacgcacgcatgcac 354
|| || |||||||||||| ||| ||| |||||||||| ||||
Sbjct: 481 ------------------acgcatacacacacacacgcacgcacgcacgcacgcacgcac 522
Query: 355 gcacatacacgccaaacagacagacaaactaaacaaataaaccccatatctttctgtaca 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 gcacatacacgccaaacagacagacaaactaaacaaataaaccccatatctttctgtaca 582
Query: 415 gcatctgcagcatctagcttttcctcatacaggtctgtatttacctgtggcttacactac 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 gcatctgcagcatctagcttttcctcatacaggtctgtatttacctgtggcttacactac 642
Query: 475 gtgagaaccaagtgccagagagggatcctaaccacaatgctgatagaaatactcatggct 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 gtgagaaccaagtgccagagagggatcctaaccacaatgctgatagaaatactcatggct 702
Query: 535 tgtttctatgctgtggtcctagagaccattggaagcaatttgctctagcatctagtcgat 594
||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 703 tgtttctatgccgtggtcctagagaccgttggaagcaatttgctctagcatctagtcgat 762
Query: 595 aaatgattaatggcatttattttatttcgtatggctcttgatttgtttttttccctactg 654
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 763 aaatgattaatggcatttattttatttcgtatggctcttgatttgtttttttccctactg 822
Query: 655 aagctcttattcag 668
||||||||||||||
Sbjct: 823 aagctcttattcag 836
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 668
Length of database: 1068
Length adjustment: 10
Effective length of query: 658
Effective length of database: 1058
Effective search space: 696164
Effective search space used: 696164
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
