BAC Information

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BAC

Clone NameMSMg01-182B11
Chromosome7 (Build37)
Map Location 14,859,911 - 14,860,508
singlet/doubletsinglet
Overlap genenone
Upstream gene6330408A02Rik, Lig1, Pla2g4c, LOC666225, Cabp5, LOC666232, Gm767, LOC666243, 9230107M04Rik, EG666256, LOC666267, LOC100042624, LOC100043194, Sult2a1, EG620627, EG434121, EG629203, LOC677512, EG629219
Downstream geneEG434123, 2810007J24Rik, EG638251, B430211C08Rik, EG194588, LOC666352, EG666312, LOC666365, LOC671978, LOC100042677, LOC100042685, EG666381, LOC100042691, LOC100042702, LOC100042707, LOC100042711, LOC100042714, LOC100042717, LOC100042721, LOC100042728, LOC100042731, LOC100042735, LOC100042739, LOC100042742, LOC235841
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-182B11.T7 (MSMg01no182_b11.b1)MSMg01-182B11.TJ (MSMg01no182_b11.g1)
ACCAG375070AG375071
length743697
length of high quality
(start - end)
371 (45 - 415)578 (74 - 651)
definitionCHROMAT_FILE: MSMg01no182_b11.b1 PHD_FILE: MSMg01no182_b11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:55:44 2005CHROMAT_FILE: MSMg01no182_b11.g1 PHD_FILE: MSMg01no182_b11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:55:44 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCATTACATCCCACTTGCAAAGCAGATGCTTGTATATGCTGGGCCAGC
TATTGATTCTAACAGTTTTTCCACCCAGACCATAAAAACCCATGGTGTAG
CATTTTCCCATAAGTGAGCAGAATTGTATCTTGAGGCTTTTATTTTCATC
AGACTTCTGGATATCATTGAATAGGGCGTTATTCAGCTTTCATGTATATG
TGGGCTTTCTGTTGTTTTTGTTGCTATTGAAGACCAGCCTTAGTCCATGC
TGATGTGATTGGATGCATAAGATTATTTCCATCTTCTTATATCTGTTGAG
ACCTTTTTGTGTCTGTTTTTGGAGAAGGTACCATGAGGTACTGAGAAGAA
AGTATATTCTTTTGACCCACCATGAAATGATCTGTAGATATCTGTTGAGT
CCATTTGGTCCATAACTCCCATTAGTTTCAATGTACCTCTGTTTAGTTTC
TGTTTCCATGATCTATCCATTGATGACACTGGCCGCGTCGAAGCCTCCCA
ATATTATTGTGTGAGGCGCACTGCCTTCCTATTATTTTCCTCGCTCTCTC
CCTTTTAGCCCTAGAAAAATTTATTTTTCCTGGGCATCAAATAACCCCCT
CCCGCCCGGAAGCTCTACCCCCTTGGTTTCTTTATATCACCTTATCCCCC
TTCCTTTTTTCCTCCCCGCCCCTATTATCCCCCTTTATTTTAG
AATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTGTGGAACTGCAGTTACTGATAGTGGT
AAGTGGCATACAGAAAATGAGAATGGAACCTGGATCCTCTTAAAGAGTAA
CAGTTGCTTTCAAACACTGAGCCATTTCCTTCCTACACCATTTCAACGTT
TGTTTGTAAAACAAACATCTTGTCCAACAAGACTTGCTTATGACATGAAT
TATGTGAAATACTGGCAGTCAATGATCTAATCTCTTTTTTATTCTCCCAT
CATAATCAGATCTGGTACCTCAGAAGAGACCAGTTTGTTAGAAAGGAATT
CAAAATGATACAGTATTTTCATCTGATTTATTCTGTAGTGTTAATGTGCA
TTCTTTTCTTTAAAACGACATCTGATGGAATAACAAAATAATGGGCCTGG
TAAAATTTTAACCACACACAAATGATAATTTAGATATTCAAGACTGTTGT
TCCTAAAATTATTGCATATGGGTACTTTATACATCAGAAGTTTCCTAAAA
TAAATAAAAAATACTTAAATGATGTTATTATATATGGGGCAGACAGTGCC
TCAACTAGAAATCATACATTACCAAGTAAAATCTACCATAGAATGAATTG
GTTACATCTTACGAGTTGTTGGCCAAATATGTCTAATATAACCCCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no182_b11.g1 MSMg01no182_b11.g1 CHROMAT_FILE:
MSMg01no182_b11.g1 PHD_FILE: MSMg01no182_b11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:55:44 2005
         (578 letters)



>mm_chr7_14859762_14860739
          Length = 978

 Score = 1029 bits (532), Expect = 0.0
 Identities = 572/598 (95%), Gaps = 20/598 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtggaactgcagttactgatagtggtaagtggcatacagaaaatgagaatggaacctgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 747 tgtggaactgcagttactgatagtggtaagtggcatacagaaaatgagaatggaacctgg 688

                                                                       
Query: 61  atcctcttaaagagtaacagttgctttcaaacactgagccatttccttcctacaccattt 120
           |||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||
Sbjct: 687 atcctcttaaagagtaaccgttgcttttaaacactgagctatttccttcctacaccattt 628

                                                                       
Query: 121 caacgtttgtttgtaaaacaaacatcttgtccaacaagacttgcttatgacatgaattat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 caacgtttgtttgtaaaacaaacatcttgtccaacaagacttgcttatgacatgaattat 568

                                                                       
Query: 181 gtgaaatactggcagtcaatgatctaatctcttttttattctcccatcataatcagatct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 gtgaaatactggcagtcaatgatctaatctcttttttattctcccatcataatcagatct 508

                                                                       
Query: 241 ggtacctcagaagagaccagtttgttagaaaggaattcaaaatgatacagtattttcatc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 ggtacctcagaagagaccagtttgttagaaaggaattcaaaatgatacagtattttcatc 448

                                                                       
Query: 301 tgatttattctgtagtgttaatgtgcattcttttctttaaaacgacatctgatggaataa 360
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| 
Sbjct: 447 tgatttattctgtagtgttaatgtgcattcttttctttaaaatgacatctgatggaatat 388

                                                                       
Query: 361 caaaataatgggcctggtaaaattttaaccacacacaaatgataatttagatattcaaga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 caaaataatgggcctggtaaaattttaaccacacacaaatgataatttagatattcaaga 328

                                                                       
Query: 421 ctgttgttcctaaaattattgc--------------------atatgggtactttataca 460
           ||||||||||||||||||||||                    ||||||||||||||||||
Sbjct: 327 ctgttgttcctaaaattattgcctaagagattttgagtaggcatatgggtactttataca 268

                                                                       
Query: 461 tcagaagtttcctaaaataaataaaaaatacttaaatgatgttattatatatggggcaga 520
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 tcagaagtttcctaaaataaataaaaaatacttaaatgatgttattatatatggggcaga 208

                                                                     
Query: 521 cagtgcctcaactagaaatcatacattaccaagtaaaatctaccatagaatgaattgg 578
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 207 cagtgcctcaactagaaatcatacattaccaagtaaaatctacaatagaatgaattgg 150


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 578
Length of database: 978
Length adjustment: 10
Effective length of query: 568
Effective length of database: 968
Effective search space:   549824
Effective search space used:   549824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)