BAC Information

Click to search

BAC

Clone NameMSMg01-182D06
Chromosome7 (Build37)
Map Location 64,776,352 - 64,897,236
singlet/doubletdoublet
Overlap geneGabrb3
Upstream genep, LOC100040839, Gabrg3, Gabra5
Downstream geneEG668807, LOC434189
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-182D06.T7 (MSMg01no182_d06.b1)MSMg01-182D06.TJ (MSMg01no182_d06.g1)
ACCAG375152AG375153
length730714
length of high quality
(start - end)
342 (74 - 415)312 (43 - 354)
definitionCHROMAT_FILE: MSMg01no182_d06.b1 PHD_FILE: MSMg01no182_d06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:55:53 2005CHROMAT_FILE: MSMg01no182_d06.g1 PHD_FILE: MSMg01no182_d06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:55:53 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(64,776,352 - 64,776,689)(64,896,932 - 64,897,236)
sequence
ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCACGCACATTCAAGGCAGAAGCAAACA
GGGCTTGTTGATGAGCAAGTCAGAGACTTAGAGAGGCTTCCTAGAATTAA
GGTTGTTTGGCCAAAGTGATAAATTAAACAACATATACATCAGCAATATA
TCTAAAGGCAAAGAAGAGAAAAATAATCAACAGTCTCATCGAGCTGCCCT
CCCTGTGAACTACAATAACTGCTTCCCTGAGAAAGAATGTTTGCTGGTAT
AGTAGTGGTGTGAATATCGGCAGAGCAACCAAATACTTTCTGGCTAGATC
CTCCATCCTTATTTCTCAGCATAATGGACATGGCATCATACTGCCCTCTG
TTTTCATTTTCCTTTTCCCCAACTTTAATAATAAATGTGAGTGCAAGTAT
TTTGTTCGCCCTTATCGATATCTACCACATGCGCGTCTAGTGCATGCATA
GGCCAGAACAACGTGTTAAATCCCATGATACTGGAGAATCACAATTTCCC
GTAGTTGTTATACTCCATGCGCCTTGCCGTTATCTCACCCCCGTTCTTCC
CCCACTGAAGATCTTAGCTACCCTTTCCATTATTCTGCCTCTCCCCCATT
ATACCTCTTCTTTTTACCCCCATTATTCTATTTCCTTTTCCCCCCCCTCT
TTCTTTATTCTCCGCTTTTGCCCTCTTTCA
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTTCCATTCATGGACTGTTAACAATGTCACCTCTTTTGAGCCGTTACAC
ATATAGTGAACTAGGTGCACAGTCCCTGAAGATCTCAAATTAGTTCAGAC
TCCTCAAGATAGAAATTGAAAGAATACTTGGAGGAAGGCTTGGCAAATAA
TGATAAAATGTAAATATTACAACATGGAAACTAGACATTCCCTGGACCAT
GTCATTTGCTGTAGTCTCCCCTCCCCCAGCCTGAAACCTGCTTGCTCAGG
GGTGGAGCTTCCTGCTCATTCGTTCTGCCACGCCCACTGCTGGAACCTGC
GTATTTTTTTCGTGCACCTCTCTCCACTGGACCCGAGATTATTTGGCGGG
AATCGGGTCCCCCCCCCCTTCCTTCATATCTGAGTGTCGCAACAGTAAAA
TTTGAGCTTTGATCAGAATAACTGTCTTGGTTACATTTCTTTCTCTCGTC
ACCTAGCCCCTCTTCTCTTCCAGGTTTCCAAAATGCCTTTCCAGGCTAGA
ACCCAGGTTGTGGTCTGCTGGCCGTACACAATATTTTGCCAGTTCCAATT
TTCTTTACTCAAAACTCTAAATTTTTTCTTTCATCATTAATGCAAATGAA
TCCCTGTAAGATAAATCAAGCACTGGACCGTGCTGAAAAAATACATTGTG
TGGCTCTTTAACAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no182_d06.b1 MSMg01no182_d06.b1 CHROMAT_FILE:
MSMg01no182_d06.b1 PHD_FILE: MSMg01no182_d06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:55:53 2005
         (342 letters)



>mm_chr7_64776152_64776893
          Length = 742

 Score =  600 bits (310), Expect = e-176
 Identities = 331/338 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   cacgcacattcaaggcagaagcaaacagggcttgttgatgagcaagtcagagacttagag 60
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 201 cacgcacattcaaggcagaagcaaacagggcttattgatgagcaagtcagagacttagag 260

                                                                       
Query: 61  aggcttcctagaattaaggttgtttggccaaagtgataaattaaacaacatatacatcag 120
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggcttcctagaattaaagttgtttggccaaagtgataaattaaacaacatatacatcag 320

                                                                       
Query: 121 caatatatctaaaggcaaagaagagaaaaataatcaacagtctcatcgagctgccctccc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caatatatctaaaggcaaagaagagaaaaataatcaacagtctcatcgagctgccctccc 380

                                                                       
Query: 181 tgtgaactacaataactgcttccctgagaaagaatgtttgctggtatagtagtggtgtga 240
           ||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct: 381 tgtgaactacaataactgcttccctgacaaagaatgcttgctggtatagtagtggtgtga 440

                                                                       
Query: 241 atatcggcagagcaaccaaatactttctggctagatcctccatccttatttctcagcata 300
           |||||||||||  ||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 441 atatcggcagaataaccaaatactttctggctagatcctccatccttatttctcagtata 500

                                                 
Query: 301 atggacatggcatcatactgccctctgttttcattttc 338
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atggacatggcatcatactgccctctgttttcattttc 538


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 342
Length of database: 742
Length adjustment: 9
Effective length of query: 333
Effective length of database: 733
Effective search space:   244089
Effective search space used:   244089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no182_d06.g1 MSMg01no182_d06.g1 CHROMAT_FILE:
MSMg01no182_d06.g1 PHD_FILE: MSMg01no182_d06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:55:53 2005
         (312 letters)



>mm_chr7_64896820_64897531
          Length = 712

 Score =  582 bits (301), Expect = e-171
 Identities = 304/305 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttccattcatggactgttaacaatgtcacctcttttgagccgttacacatatag 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 gaattcttccattcatggactgttaacaatgtcacctcttttgagccgttacacatatag 358

                                                                       
Query: 65  tgaactaggtgcacagtccctgaagatctcaaattagttcagactcctcaagatagaaat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 tgaactaggtgcacagtccctgaagatctcaaattagttcagactcctcaagatagaaat 298

                                                                       
Query: 125 tgaaagaatacttggaggaaggcttggcaaataatgataaaatgtaaatattacaacatg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 tgaaagaatacttggaggaaggcttggcaaataatgataaaatgtaaatattacaacatg 238

                                                                       
Query: 185 gaaactagacattccctggaccatgtcatttgctgtagtctcccctcccccagcctgaaa 244
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 237 gaaactagacattccctggaccatgtcatttgctgtagtctcccctcccccatcctgaaa 178

                                                                       
Query: 245 cctgcttgctcaggggtggagcttcctgctcattcgttctgccacgcccactgctggaac 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 177 cctgcttgctcaggggtggagcttcctgctcattcgttctgccacgcccactgctggaac 118

                
Query: 305 ctgcg 309
           |||||
Sbjct: 117 ctgcg 113


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 312
Length of database: 712
Length adjustment: 9
Effective length of query: 303
Effective length of database: 703
Effective search space:   213009
Effective search space used:   213009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)