BAC Information

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BAC

Clone NameMSMg01-182H04
Chromosome7 (Build37)
Map Location 144,798,080 - 144,968,335
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC546009, EG621677, EG668771, Mgmt, EG621804, Ebf3, 9430038I01Rik, Txnl2
Downstream geneLOC435235, Tcerg1l, LOC100043290
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-182H04.T7 (MSMg01no182_h04.b1)MSMg01-182H04.TJ (MSMg01no182_h04.g1)
ACCAG375327AG375328
length749723
length of high quality
(start - end)
241 (71 - 311)308 (44 - 351)
definitionCHROMAT_FILE: MSMg01no182_h04.b1 PHD_FILE: MSMg01no182_h04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:56:11 2005CHROMAT_FILE: MSMg01no182_h04.g1 PHD_FILE: MSMg01no182_h04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:56:11 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(144,798,080 - 144,798,318)(144,968,033 - 144,968,335)
sequence
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCAGGAATAGCAAAGTCCTGGAGAACCTCAT
GGGCTCTAGGAAAGAAATGGGGGCTTCTGTCTCCCAGATATGTCATTAAT
GCCTTTTATCACACTAACAGTCCGATCACATCTCTCCTGCTCTGTTTTTC
TTTGATTGTTGAAATGAAGCTTTGATCCTGTTTCTCAGTTATCACTGAAG
GAGTTCCTGGACCTCTACTGCCGGAAGGTAGATTCCTTCAAAGAGTCCTG
ATTTTGTGGTAGGTTCTAAAACCACGTGCTAGAAGCAGGAGCCCTGCCCC
TGGGCAGCCTCAGCTCTGTCTCTGAGTGCTTGGTTGGAGCTTGTGACAGG
TATGAAGCCCCCACTCCCTGTGTTTGTTTCTGCAGTTCGCTCAACAGCAA
CTCCAATATCTAGGTTTAGCGTGTGCTCTTTTCCCTCCTCTTTTCCTTTG
CCTTTCCTCTTTTACCTCTCATCATCCTACGAATTACCTCCTTTTCTTGT
CATTATCTCCTCCCGCCCCCCTTCCATATCTTTCCCCCCCCTTTACATCT
TCAATCTCTTCCCCTTTAACTCCTCTTTTTTCTTTCTTCTACACTTTCTC
CCTTTTTTCCTCCCCCTTCTCCCTCCCTCCCCTTTTTTTTTTTTCCTTTT
TTCCCCCCCTTCTTTTTTATTTTTACCCCTCTCCTTTCCCTTCTTTTCN
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGTAA
TTCCACACAAATGTAGAAACTATCTGCAGCTGGCAAAGCCATGTCTCTGC
TAGAGCATGAGGCAAATCACAGTCAACTGCTGCAGAGTCTGAAGCAGCCT
GATAGCCCCACACCTGGGGTTAAAACAAAAACACATTCTTATAATATTTC
CGTGTTTTTAAAGAAACCCAAATTCCAGAATTCTTCAAGACGTCACTACA
GGAGACAGGTGTCAATTTTAGTTAATAAACACGCTGCTTCCCATGAGGCA
AATAAATCTCTCCTGCCAGTGTGGCATTCCTGGAGATTGCAGAATCCCCC
TATGATTTTTGTTTTACCCCCCCCCCCTTCGGTAATTAATATAACAACAT
TGCATAAATCCCGCCCCCACAAATCTATGCTTCCTATCCCCATGACTGCG
TATTACACTTGTTGCACGATTTTTTAAGTTACACAGCACCTGATATTCCT
AGAACGCTCTTTCTCGTTTCCTAGGCTATAGATACGTTATATAAGACCTG
TATGGCTCTGCCTCTTTAATTACCCTCTATAATATTACACCCCTTGATAG
CCATTTTTTTTCACCCACTTTTTTTTTTCTATAGATCCTTATTTTTGCCT
TCTAAATGATTTTAAACATGAAACGTTTTTTCACTTATTAAAATAATTAC
TTTTATTATTTCTAAATAAGACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no182_h04.b1 MSMg01no182_h04.b1 CHROMAT_FILE:
MSMg01no182_h04.b1 PHD_FILE: MSMg01no182_h04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:56:11 2005
         (241 letters)



>mm_chr7_144797880_144798520
          Length = 641

 Score =  462 bits (239), Expect = e-135
 Identities = 239/239 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   caggaatagcaaagtcctggagaacctcatgggctctaggaaagaaatgggggcttctgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caggaatagcaaagtcctggagaacctcatgggctctaggaaagaaatgggggcttctgt 260

                                                                       
Query: 61  ctcccagatatgtcattaatgccttttatcacactaacagtccgatcacatctctcctgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctcccagatatgtcattaatgccttttatcacactaacagtccgatcacatctctcctgc 320

                                                                       
Query: 121 tctgtttttctttgattgttgaaatgaagctttgatcctgtttctcagttatcactgaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctgtttttctttgattgttgaaatgaagctttgatcctgtttctcagttatcactgaag 380

                                                                      
Query: 181 gagttcctggacctctactgccggaaggtagattccttcaaagagtcctgattttgtgg 239
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gagttcctggacctctactgccggaaggtagattccttcaaagagtcctgattttgtgg 439


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 641
Length adjustment: 9
Effective length of query: 232
Effective length of database: 632
Effective search space:   146624
Effective search space used:   146624
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no182_h04.g1 MSMg01no182_h04.g1 CHROMAT_FILE:
MSMg01no182_h04.g1 PHD_FILE: MSMg01no182_h04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:56:11 2005
         (308 letters)



>mm_chr7_144967642_144968349
          Length = 708

 Score =  563 bits (291), Expect = e-165
 Identities = 300/303 (99%)
 Strand = Plus / Minus

                                                                       
Query: 6   aattccacacaaatgtagaaactatctgcagctggcaaagccatgtctctgctagagcat 65
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 694 aattccacacaaatgtagaaactatctgcagctggcaaagccatgtctctgctagagcat 635

                                                                       
Query: 66  gaggcaaatcacagtcaactgctgcagagtctgaagcagcctgatagccccacacctggg 125
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 gaggcaaatcagagtcaactgctgcagagtctgaagcagcctgatagccccacacctggg 575

                                                                       
Query: 126 gttaaaacaaaaacacattcttataatatttccgtgtttttaaagaaacccaaattccag 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 gttaaaacaaaaacacattcttataatatttccgtgtttttaaagaaacccaaattccag 515

                                                                       
Query: 186 aattcttcaagacgtcactacaggagacaggtgtcaattttagttaataaacacgctgct 245
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 514 aattcttcaagacatcactacaggagacaggtgtcaattttagttaataaacacgctact 455

                                                                       
Query: 246 tcccatgaggcaaataaatctctcctgccagtgtggcattcctggagattgcagaatccc 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 tcccatgaggcaaataaatctctcctgccagtgtggcattcctggagattgcagaatccc 395

              
Query: 306 cct 308
           |||
Sbjct: 394 cct 392


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 308
Length of database: 708
Length adjustment: 9
Effective length of query: 299
Effective length of database: 699
Effective search space:   209001
Effective search space used:   209001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)