BAC Information

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BAC

Clone NameMSMg01-183C05
Chromosome7 (Build37)
Map Location 64,517,721 - 64,518,145
singlet/doubletsinglet
Overlap geneGabrg3
Upstream genep, LOC100040839
Downstream geneGabra5, Gabrb3, EG668807, LOC434189
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-183C05.T7 (MSMg01no183_c05.b1)MSMg01-183C05.TJ (MSMg01no183_c05.g1)
ACCAG375820AG375821
length725707
length of high quality
(start - end)
434 (44 - 477)503 (76 - 578)
definitionCHROMAT_FILE: MSMg01no183_c05.b1 PHD_FILE: MSMg01no183_c05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:57:04 2005CHROMAT_FILE: MSMg01no183_c05.g1 PHD_FILE: MSMg01no183_c05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:57:04 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTTGCTGAGAATTCGACACACAGTCCAGTGATATACTCCCTTAATAGT
TCCTGTAGGACCGCCCCCCCCCCACACACACACACTAGCAAACTCACATG
AAAAAACATGTGAGTATCCATGAAATAAATCCATTACCATTTGAAAGAAG
TCCCCCTTCCAGGGAGTAGGAAGCAATGCCAAGCTTCAGTTCCAAGGTGG
TGTATGCTCTCTGAGGAGGAGAAGCTCAATCCTGCCCTGCCATTCTACCT
CTTTTTCCTTGCCACAAATGTCACTGGATATGCCCTTAGTCATTGAATGA
ACTTTATTTTTTTATCTAGAAACAGTAAATAAGTGACTATTAATTTACAA
CAATATTGTTTTTTTTACCCAACGTTCTAAGGATCAAATTCAAAGTCTTC
TACATTCCAGGAATGCTCTCTACAGTTAAGGAAAACCCTCAGCCCCTAAT
GAATATTCGATGAAATTCTAATAATTAAAGAAATCAACAATGTTCCCAGA
ATTTATAATTCAGCTGCTTCCTAGCTCAAAGCAACTTGATAAGGCAGAAA
AGCTGTCAATCACACATCAGAATTCACACCCTGGTTGAGTGACTTTCAAA
CTCATAAACTGGCCCTTGGTTTTCTAGTTTGTAAACGATGAGAGGCTAAA
TCTGAATCCCTCAATGTTCATTGTG
CAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTTGAGTGTCTGTATGCCTGAAATG
TTTTTATTTTTTAACATTTTGTCTTCCTTTTTATATCTAATATTAAAATA
TAATTGATAAGCTATAAAATTCATTGAATTGAAGTTTATAGTCCAATGCT
CTTATTATATTTATAAGGTTATGTAGCCATTATTTAAGGTTAGAAAATTT
TCATCACCTCCAAGAGAAGAAAGTTCTACCTTTGATCAAACCCATTGTCC
TTTCTCTCCTAGAATCTGAAGTACTCAAAAGAGTTTAATTTATTTTTTTT
AGAGTGCTATTATAGACATTTTATGTGATAGAATTAGGATGCATGGGTTT
TTGTGACTGAGTGATTGCCTCTTACTATTTCCAAGTTTCATCTTGTCCTT
GTGAATGTTTCATCATCTCAACAAAGCTAAGAATTATCCAGAAAGAGGGA
CCGAATTGAGAAAATGTCCCCATAAGATTGGAGATAGGCAACTCTGCAGG
GGAATTTGTTGATTGATGATTGATGTGGGGGAACCCTGTCCATTGTGGTC
GGTCTTACCTGAGCTGGTCATCGTGATTTCTAAGATTGTCCTGTAATAAT
TTGACCTCCATGTACCCAGTTCTAATTTCTGCCTCCCGGTTTTTGTCAAT
TATTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no183_c05.b1 MSMg01no183_c05.b1 CHROMAT_FILE:
MSMg01no183_c05.b1 PHD_FILE: MSMg01no183_c05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:57:04 2005
         (434 letters)



>mm_chr7_64517517_64518345
          Length = 829

 Score =  725 bits (375), Expect = 0.0
 Identities = 416/431 (96%), Gaps = 7/431 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttgctgagaattcgacacacagtccagtgatatactcccttaatagttcctgta 64
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttgctgagaatt-gacacacagtccagtgatatactcccttaatagttcctgta 263

                                                                       
Query: 65  ggaccgccccccccccacacacacacactagcaaactcacatgaaaaaa-catgtgagta 123
           | ||   ||||||| |||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 264 gaaca--cccccccacacacacacacactagcaaactcacatgaaaaaaacatgtgagta 321

                                                                       
Query: 124 tccatgaaataaatccattaccatttgaaagaagtcccccttccagggagtaggaagcaa 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 tccatgaaataaatccattaccatttgaaagaagtcccccttccagggagtaggaagcaa 381

                                                                       
Query: 184 tgccaagcttcagttccaaggtggtgtatgctctctgaggaggagaagctcaatcctgcc 243
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 382 tgccaagcttcagttccaaggtggtgtatgctctctgaggaggagaagctcagtcctgcc 441

                                                                       
Query: 244 ctgccattctacctctttttccttgccacaaatgtcactggatatgcccttagtcattga 303
           |||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 442 ctgccactctacctctttttccttgcca-aaatgtcactggatatgcccttagtcattga 500

                                                                       
Query: 304 atgaactttatttttttatctagaaacagtaaataagtgactattaatttacaacaatat 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atgaactttatttttttatctagaaacagtaaataagtgactattaatttacaacaatat 560

                                                                       
Query: 364 tgttttttttacccaacgttctaaggatcaaattcaaagtcttctacattccaggaatgc 423
           |  |||||||| | || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 t--tttttttatctaaggttctaaggatcaaattcaaagtcttctacattccaggaatgc 618

                      
Query: 424 tctctacagtt 434
           |||||||||||
Sbjct: 619 tctctacagtt 629


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 434
Length of database: 829
Length adjustment: 9
Effective length of query: 425
Effective length of database: 820
Effective search space:   348500
Effective search space used:   348500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)