Query= MSMg01no183_l16.b1 MSMg01no183_l16.b1 CHROMAT_FILE:
MSMg01no183_l16.b1 PHD_FILE: MSMg01no183_l16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:57:49 2005
(483 letters)
>mm_chr7_149865027_149865909
Length = 883
Score = 888 bits (459), Expect = 0.0
Identities = 474/483 (98%), Gaps = 8/483 (1%)
Strand = Plus / Plus
Query: 5 gaattcagtggcagaactcaccttgtgggtcctccacttcacggcgggacatgggtgtgt 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagtggcagaactcaccttgtgggtcctccacttcacggcgggacatgggtgtgt 264
Query: 65 agaagaagccacgctccccacacaccaggtagagagcctccaccaggtgggaaccacaaa 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agaagaagccacgctccccacacaccaggtagagagcctccaccaggtgggaaccacaaa 324
Query: 125 ggtgctgcttgacaaaagcctgggtggggtgggactcccagaggaagagcagggccagca 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ggtgctgcttgacaaaagcctgggtggggtgggactcccagaggaagagcagggccagca 384
Query: 185 ggggcaggaagcgcatccacagggccatgttgaaacaataacctggaagataggctgggt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ggggcaggaagcgcatccacagggccatgttgaaacaataacctggaagataggctgggt 444
Query: 245 tgaggatagcaaaagtttcacgtaagagaggaggccatatcctacctcaagtccctgagg 304
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 445 tgaggatagcaaaagtttcacgtaagagaggaggctatatcctacctcaagtccctgagg 504
Query: 305 tcttagctggggagccaggcccactgagaagagtaccttcctgcttgctgatggtttttg 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tcttagctggggagccaggcccactgagaagagtaccttcctgcttgctgatggtttttg 564
Query: 365 acccc----agcggatcacttagggctggtggttactgggtccccactacctttatagac 420
| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 a----ttgtagcggatcacttagggctggtggttactgggtccccactacctttatagac 620
Query: 421 caaagcacctcctctctgccccctggactttgctgtttgacccattaagggctccaggtg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 caaagcacctcctctctgccccctggactttgctgtttgacccattaagggctccaggtg 680
Query: 481 ggg 483
|||
Sbjct: 681 ggg 683
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 483
Length of database: 883
Length adjustment: 10
Effective length of query: 473
Effective length of database: 873
Effective search space: 412929
Effective search space used: 412929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no183_l16.g1 MSMg01no183_l16.g1 CHROMAT_FILE:
MSMg01no183_l16.g1 PHD_FILE: MSMg01no183_l16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:57:49 2005
(277 letters)
>mm_chr7_149929608_149930282
Length = 675
Score = 435 bits (225), Expect = e-126
Identities = 256/267 (95%), Gaps = 2/267 (0%)
Strand = Plus / Minus
Query: 5 agtctcaataatactttggagaagggattaggtcacagttagaacttggagcaggtctta 64
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 agtctcaatgatactttggagaagggattaggtcacagttagaacttggagcaggtctta 410
Query: 65 agtctcagcaagatcctggagagggttttaggcaaaggttaaaagcccaagtgaaatgca 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 agtctcagcaagatcctggagagggttttaggcaaaggttaaaagcccaagtgaaatgca 350
Query: 125 ggggaaggtcttaggtcccagtgagatcctaaggagtccttaggactgaatcagaatatt 184
|||||||||||||||||||| |||||||||||| || |||||||||||||||||||||||
Sbjct: 349 ggggaaggtcttaggtcccaatgagatcctaagaaggccttaggactgaatcagaatatt 290
Query: 185 aggaaggcctttgtggagctctgagtactgggaaaggtactgagaccagtgaagccctat 244
|||||||||||||| ||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct: 289 aggaaggcctttgtagagct--gagtactgggaaaggtactaagaccagtgaagccctat 232
Query: 245 tttggtcttagtgaatagtgagagggt 271
||||||||||||||||||||||||
Sbjct: 231 aaaggtcttagtgaatagtgagagggt 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 277
Length of database: 675
Length adjustment: 9
Effective length of query: 268
Effective length of database: 666
Effective search space: 178488
Effective search space used: 178488
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
