BAC Information

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BAC

Clone NameMSMg01-183N11
Chromosome7 (Build37)
Map Location 126,956,517 - 126,956,797
singlet/doubletsinglet
Overlap gene2610020H08Rik
Upstream gene9030624J02Rik, 2310008H09Rik, Iqck, Gprc5b, Gpr139, LOC100042871, Gp2, Umod, 1700007B13Rik, C730027J19Rik, Acsm2, Acsm1, BC048390, Thumpd1, EG434233, Acsm3, Exod1
Downstream geneDcun1d3, LOC100043399, LOC100043396, Lyrm1, Dnahc3, Tmem159, Zp2, Anks4b, Crym, Abca14, Abca15, Abca16, LOC668429, LOC546994, LOC100042914, E130201H02Rik, LOC637957, Uqcrc2, 4930408O21Rik, BC030336, E030013G06Rik, EG436008
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-183N11.T7 (MSMg01no183_n11.b1)MSMg01-183N11.TJ (MSMg01no183_n11.g1)
ACCAG376308AG376309
length744730
length of high quality
(start - end)
54 (46 - 99)281 (78 - 358)
definitionCHROMAT_FILE: MSMg01no183_n11.b1 PHD_FILE: MSMg01no183_n11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:57:58 2005CHROMAT_FILE: MSMg01no183_n11.g1 PHD_FILE: MSMg01no183_n11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:57:58 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTAGGAAGTCCTCATTTCTCTTTTTTTCTGCCTTGACTCCTTAATT
GTTCATAATGTAGCTGTTCACTCCCCTTGAATTGGCAAGCTTTCTCTTGT
TTCTGATGATGAGCGCAGCTATAATCTGTGGCGGTCCCATAGGACACAGG
GGAGTTATTTTCATTTTCTTATGTCTGTTGACACTTGCTCTGGGACCAAG
TATATAGTCAATCTGTGAGAATTTTCTAAGATGTGCTGATAACAAGATAT
ATTCTTTTGTGTTTCGGCTGAAATGTTCTCTGAATATCTGCTAGGTCCTT
TCATAACCTCTTTTTTTTCCACTCTTCCTCTGCCTAGCTCATGTATGCAC
TACCTGCCCTCTGTCCACCCCACAGAGCTTAATAATCTCACTCTGATTGG
GTAATACTCTTATCCTCATAATCGCCTTATAACTCGACATATXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTATCCTCCCTAACATTCTA
CCCTCCATTTCTAATTGTCCAAACCTTATCGGACTTTTACAATTCCTTTC
TTTTTCCCCCCTGTAACCCCCCCTCATTCGCTCTCCTTTTCCCAACCTTG
CCCCTTATCCAAAAACCTTTTCCCCTTTTCCCCCCTTCTGTAAA
CGAATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTAGCTGTTAGAACTGCTTGATC
TTATAACCTTCAGTGTTGTGTTCTCTCTTGAATTTCTGGGGACAGGATAG
CCAGCTGAGGCTATGGGTGGGGGATAGCAGGATGGGAAGAGAAGTTAGTT
ACATGTCCTACATGGTATTCAGTAGCAACTTTTTTTCTCCTTTTCTTCCC
TTTGAGCTATTTTGTTAAAAAAAAAAAAGGTTGAAAGACTGGCTGAGCAA
CTGAAAATACAGGAGGAAATGTAGAAGCCTGGGAATCAAAAAATGGAGGA
GATGGGAATTTTTAGGGTTCACTCCTCTCTCTTTCTGAAAAAGTAACAGA
GTTGGTTGTACTCCCCCACAACCTGAAAGTATAGGTAGACCAACCTGAAA
AACTTCCATCACAAGAAACAGGAGAACAAACAGATTCATTCTCTGTGATT
GATCCTGAGCGCCACCCAGACCACCATGATCTCTTTCCGAGGGAAGTCCA
ATTTTTGTCTCACATTGACGCCCATACGCCCCTGCTCTTCCTCGTACATT
AGGTTTACCCCCCGCCCTCTTTCGTCGATAGTCTCCCCTGCCCCTCCCCC
CTTTTTTTCTTTCCCCCCCCTTTTTCCCCTCCCCTTCTGTTTTTGGCCCA
CATTTTCCCTGTTTTCCTCCCCCCCCTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no183_n11.g1 MSMg01no183_n11.g1 CHROMAT_FILE:
MSMg01no183_n11.g1 PHD_FILE: MSMg01no183_n11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:57:58 2005
         (281 letters)



>mm_chr7_126956447_126957126
          Length = 680

 Score =  514 bits (266), Expect = e-150
 Identities = 278/282 (98%), Gaps = 2/282 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttagctgttagaactgcttgatcttataaccttcagtgttgtgttctctcttgaatttct 60
           ||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct: 351 ttagctgttagaactgcttgatcttataaccttcagtgttg-gttatctcttgaatttct 293

                                                                       
Query: 61  ggggacaggatagccagctgaggctatgggtgggggatagcaggatgggaagagaagtta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 ggggacaggatagccagctgaggctatgggtgggggatagcaggatgggaagagaagtta 233

                                                                       
Query: 121 gttacatgtcctacatggtattcagtagcaactttttttctccttttcttccctttgagc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 232 gttacatgtcctacatggtattcagtagcaactttttttctccttttcttccctttgagc 173

                                                                       
Query: 181 tattttgtt-aaaaaaaaaaaaggttgaaagactggctgagcaactgaaaatacaggagg 239
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 172 tattttgttgaaaaaaaaaaaaggttgaaagactggctgagcaactgaaaatacaggagg 113

                                                     
Query: 240 aaatgtagaagcctgggaatcaaaaaatggaggagatgggaa 281
           ||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 112 aaatggagaagcctgggaatcaaaaaatggaggagatgggaa 71


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 281
Length of database: 680
Length adjustment: 9
Effective length of query: 272
Effective length of database: 671
Effective search space:   182512
Effective search space used:   182512
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)