BAC Information

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BAC

Clone NameMSMg01-184C10
Chromosome7 (Build37)
Map Location 121,749,361 - 121,901,271
singlet/doubletdoublet
Overlap geneCalca, LOC100043295, Calcb
Upstream geneEG434228, Spon1, Rras2, LOC668451, Copb1, Psma1, 4933406I18Rik, Pde3b, Cyp2r1
Downstream geneInsc, EG627967, LOC668472, Sox6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-184C10.T7 (MSMg01no184_c10.b1)MSMg01-184C10.TJ (MSMg01no184_c10.g1)
ACCAG376522AG376523
length759721
length of high quality
(start - end)
301 (60 - 360)287 (77 - 363)
definitionCHROMAT_FILE: MSMg01no184_c10.b1 PHD_FILE: MSMg01no184_c10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:58:24 2005CHROMAT_FILE: MSMg01no184_c10.g1 PHD_FILE: MSMg01no184_c10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:58:24 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(121,749,361 - 121,749,657)(121,900,986 - 121,901,271)
sequence
AGAAAAATTTTATTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXCGCGGAATTCAGCTGACACAGAGAGGTTTGGAAAATGGCTT
AGTCTGTTTATGCTCATTTAATTGAATGGAATAGCCTGGGTGATTTACTT
AAAAATATATTTCTCACAGTTCTGGAGGCAGGAGAGCCCAATATCAAAGT
GCCCACATGTTGAATGTTTACCTGTGAGCACATGGTAAAAGAACATGAGG
GTGGGAAAACTCCCAGGATAAGCAACTATTTTTGCCAAATATTTTGATCT
TCATCGAGATGATTCCTTGAGCAAGCCTGATGCGAATAGGGCTCTGGCCC
CAGTAGTCCCAAAGTTTTTTTTGTCCACCACCACCCCCCTCAGAATTCAC
TCTAGGACCATGTTTCTGATTCAAGCCCCCAGAATGAATCACATAGTTCC
CTCATGGGAACTAAAATTTTAACTCCCCCCCCAAACGGGGTTTTACAAAA
TATAAATTTTTTGGTAGGGGTGTGTTTTTATATCTTATTCCCCCCTTTTG
TTGTTGGTAAAAAATAAATAATATTTTTTTTTCTGTTTGTTTGTCTTTTT
TTTTTTTTTCTTACAATAATTCCTTCCCCTCCTTCTCTATTAACCTTCGA
TCCATAAGTCTAACCTTTACTTTTTTTTTTCCCCCCCCCTTATCACTTCT
ACAATATACCAACTACACCGAATATCCCTCTTCCATATCTTTACAACATA
CCCACTCCT
CGATTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAGATAAACCCCAACAGGATTCTT
CCTCAGAATCTGACAATAGGAATCTGAAATGCATAGCCAAGATATATTGA
AAATAGGGGTCTTTTCCTATTGGTAAGATTTTTTTTAAGTAGTAAATACA
AAGGAGTTTTGATCCCAGGATGAATTTAGGAAGTTGAATAATAGTCTCAA
GATTTACCCAAGGAATATTAAAGCTTGATTAATAGCCGTGATAAGGAGAC
AGAGGGTGATGGATTCAGAACTCACACATCTCCCAAACACAAGCAGAAAG
TGAATGGAGCTGTTTAGGCACACCCCTCCACTGTTGCTCCTGCTGCCCTC
ATTGCTGAATCCACCTCTGCTCCAGAGCAATGGGGCAGCTAGCCTGGGTC
AGAGAAACAGGCAGAGTACGCTTTTGGAGCCTCTTCTACAGTGATAAGGA
ATGAGCCCCAGCTCCAGCACCAAGACTAGGACAAGTCTTCTAGAGTATTC
TTAAAGAAGTGGCTTTTTGGTCTTTGAGACTTCGGGGAAACAAATAAGCA
GGTCTGTACAGTCCCCAGAGACCAAGCCTTAGGCTAGACTAAGCAATGGA
CCTAAGCCCCACCCCTGCACACACACACACACACACACTCTTATATACAT
TTTCCAAGTGCCTGCTGGAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no184_c10.b1 MSMg01no184_c10.b1 CHROMAT_FILE:
MSMg01no184_c10.b1 PHD_FILE: MSMg01no184_c10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:58:24 2005
         (301 letters)



>mm_chr7_121749157_121749857
          Length = 701

 Score =  536 bits (277), Expect = e-157
 Identities = 292/297 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagctgacacagagaggtttggaaaatggcttagtctgtttatgctcatttaatt 64
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 205 gaattcagctgacacagagaggtttggaaaatggcttagtctgtttatactcatttaatt 264

                                                                       
Query: 65  gaatggaatagcctgggtgatttacttaaaaatatatttctcacagttctggaggcagga 124
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gaatggaatagcctgagtgatttacttaaaaatatatttctcacagttctggaggcagga 324

                                                                       
Query: 125 gagcccaatatcaaagtgcccacatgttgaatgtttacctgtgagcacatggtaaaagaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gagcccaatatcaaagtgcccacatgttgaatgtttacctgtgagcacatggtaaaagaa 384

                                                                       
Query: 185 catgagggtgggaaaactcccaggataagcaactatttttgccaaatattttgatcttca 244
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 catgagggtaggaaaactcccaggataagcaactatttttgccaaatattttgatcttca 444

                                                                    
Query: 245 tcgagatgattccttgagcaagcctgatgcgaatagggctctggccccagtagtccc 301
           | ||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 445 tagagatgattccttgagcaagcctgatgggaatagggctctggccccagtagtccc 501


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 301
Length of database: 701
Length adjustment: 9
Effective length of query: 292
Effective length of database: 692
Effective search space:   202064
Effective search space used:   202064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no184_c10.g1 MSMg01no184_c10.g1 CHROMAT_FILE:
MSMg01no184_c10.g1 PHD_FILE: MSMg01no184_c10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:58:24 2005
         (287 letters)



>mm_chr7_121900786_121901472
          Length = 687

 Score =  538 bits (278), Expect = e-157
 Identities = 284/286 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagataaaccccaacaggattcttcctcagaatctgacaataggaatctgaaatgcatag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 cagataaaccccaacaggattcttcctcagaatctgacaataggaatctgaaatgcatag 427

                                                                       
Query: 61  ccaagatatattgaaaataggggtcttttcctattggtaagattttttttaagtagtaaa 120
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 ccaagatatatagaaaataggggtcttttcctattggtaagattttttttaagtagtaaa 367

                                                                       
Query: 121 tacaaaggagttttgatcccaggatgaatttaggaagttgaataatagtctcaagattta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 tacaaaggagttttgatcccaggatgaatttaggaagttgaataatagtctcaagattta 307

                                                                       
Query: 181 cccaaggaatattaaagcttgattaatagccgtgataaggagacagagggtgatggattc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 cccaaggaatattaaagcttgattaatagccgtgataaggagacagagggtgatggattc 247

                                                         
Query: 241 agaactcacacatctcccaaacacaagcagaaagtgaatggagctg 286
           |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 246 agaactcacacatctcccaatcacaagcagaaagtgaatggagctg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)