BAC Information

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BAC

Clone NameMSMg01-184D04
Chromosome7 (Build37)
Map Location 4,068,810 - 4,069,360
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041028, LOC627003, EG664817, Speer9-ps1, AU018091, LOC100041503, Nlrp12, GA_x5J8B7W3939-136239-135295, LOC384710, Myadm, Prkcc, Cacng7, LOC672553, Cacng8, Cacng6, LOC100041095, 9930022N03Rik, LOC100041109, Oscar, Ndufa3, Tfpt, Prpf31, Cnot3, Leng1, Tmc4, Leng4, Tsen34, Rps9, Lilrb3, Pira1, LOC100041137, LOC100041146, Pira2, LOC675749, LOC100038908, LOC100038909, Pira11, Pira3, LOC100041186, LOC664841, Lair1
Downstream geneTtyh1, Leng8, Leng9, Cdc42ep5, LOC384521, EG232801, Ncr1, Gp6, LOC100041851, Atp6v0c-ps1, Rdh13, Eps8l1, Ppp1r12c, Tnnt1, Tnni3, 6030429G01Rik, Syt5, Ptprh, LOC669557, Tmem86b, Saps1, EG628211, 1500019G21Rik, Brsk1, BC022651, Suv420h2, Cox6b2, 4930401F20Rik, Il11, 4930572D21Rik, 2210411K11Rik, Rpl28, Ube2s, D430041B17Rik, Isoc2b, Isoc2a, LOC384524, Zfp628, Nat14, A430110N23Rik, LOC665049, Gm1079, Gm1078, Zfp579, Fiz1, Zfp524, 6430526N21Rik, 4632433K11Rik, Zfp784, Zfp580, Ccdc106, U2af2, Epn1, Rfpl4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-184D04.T7 (MSMg01no184_d04.b1)MSMg01-184D04.TJ (MSMg01no184_d04.g1)
ACCAG376556AG376557
length760817
length of high quality
(start - end)		559 (57 - 615)---
definitionCHROMAT_FILE: MSMg01no184_d04.b1 PHD_FILE: MSMg01no184_d04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:58:28 2005CHROMAT_FILE: MSMg01no184_d04.g1 PHD_FILE: MSMg01no184_d04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:58:28 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCCCAAACCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXCGCGGAATTCATTTTAACATTTAAAAGCTGAGGGATTTTGCTTT
AAAAATATTCAGATTTCAGTCTTCGTTTGGAAATTTGGAACATCTGGTAA
GGCTGGGTTCCTCTTCCCATATGGCAACACTGGCTGAGACTAAATGGCAT
CAACCACGTGTCCAGAACCAGCTTCCCCACACGCAGCTTGGATTAATGCC
CATGGGCCCTGAGGTTATTTGGGAATAGAGTCCCCAGCTGGGGACTCCAG
AAACCAACAAGGACCATATCTCCATATCCAAAAGAAATAAATAGGGTATA
ATGTCTGATGCAGGTCAAACTAACAGACCTGTATCAGACATACCACACAT
CTCTAATGTAATGGGACAGGTGTCTTGAGTTGAATCAATGCAGACTGAAG
CAATTCCCCAAGGGGGCTGCCTTCTGGAACCAAACCACACATTCAGGAGG
CAGACGGAGACAAATGGAGTGGAGGGACAGAGAGGCAATCAGTTCAAATT
CTCCCCGCCCCCATCTCTCTCCCTCTCCCCCATCTGTGTGTGTGTGTGTG
TGTGTGTGTGTGTGTGTGTGTGTAAAATATATTACATTTATATAANTTAC
TATTTGTTCGGTATTTGCGTAATTATATTACCCCACCGCTATTTTTGTAA
GTCGTTCTTTACTTTTTTTGCTCCACATCTCGTTTCTCATTATTATTATT
ATTCCCCCCN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCGAAANCGAAAAAACAAT
TTTTTTTTAAAGACGGTGTTGGGAAACCAAACCTGGTGTGAAAATCCTTG
AACGGGCTCTCGAAGAGGTAGGAGGGGGGAGGGGAGTGTATGGAGGGGGA
ATAGCTGGAGGGAGGGTATTGTTTTGCGGTTGTTGGGGTTTGCTTGGCAA
AAGAGAGGGGGTGGATTTTCTCCTTTAATTCCACTGCACTAGGTTTTTGG
GGGAACCATGGGTTTCTTTAAACAATGGAACAGAAGGTTCTTCCAGCTAG
GTCCCTGGAGAAATTGTTATGAAAGAGGAAGATTAGGATGAAACTTGGAT
CTTTAGGGGAAACTTTGAGGGGTTTCTCTTCGGGGGGTCCCCCTCCTATC
CTTTTTGGTGGGGAATAGGCCCCTTTCTTTTTTTTCCTCCTTTTATAGGG
CTATATTGTGGGTGTTTTGGGGTGGAGGAAAAGGGGTGTTTTCTTTATTA
AAAAAAAGAGGGGTGGTGGTCCGCTCCTGTCTTTATTTATTTCTGTGGAG
AACAGAAATATTTTTTATTCTATGAAGTTTGTGGGGTGGGGCGCTATAGA
GAGAGAGAATCTGCGTTATGTGTGAGAATCAACGGAGGAGGAGGTATTTT
TAGATGAGTTTTTTGGGAACCCCCCCCAGGCGTCCCTTTCTACTTTTTAT
TATTTTCTGGGGGGGGGTGGGGGGTTTGTTTTTGTTGTTGAAATCTTTCG
CCGGTGTGGGAGTTTCTCTTATTGTGATAGAAAAAAGAATAAATATTATT
ACAGCTTCTTTTTGTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no184_d04.b1 MSMg01no184_d04.b1 CHROMAT_FILE:
MSMg01no184_d04.b1 PHD_FILE: MSMg01no184_d04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:58:28 2005
         (559 letters)



>mm_chr7_4068606_4069564
          Length = 959

 Score = 1035 bits (535), Expect = 0.0
 Identities = 547/551 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcattttaacatttaaaagctgagggattttgctttaaaaatattcagatttcagt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcattttaacatttaaaagctgagggattttgctttaaaaatattcagatttcagt 264

                                                                       
Query: 65  cttcgtttggaaatttggaacatctggtaaggctgggttcctcttcccatatggcaacac 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cttcgtttggaaatttggaacatctggtaaggctgggttcctcttcccatatggcaacac 324

                                                                       
Query: 125 tggctgagactaaatggcatcaaccacgtgtccagaaccagcttccccacacgcagcttg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tggctgagactaaatggcatcaaccacgtgtccagaaccagcttccccacacgcagcttg 384

                                                                       
Query: 185 gattaatgcccatgggccctgaggttatttgggaatagagtccccagctggggactccag 244
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 385 gattaatgcccatgggccctgaggttatttgggaataaagtccccagctggggactccag 444

                                                                       
Query: 245 aaaccaacaaggaccatatctccatatccaaaagaaataaatagggtataatgtctgatg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aaaccaacaaggaccatatctccatatccaaaagaaataaatagggtataatgtctgatg 504

                                                                       
Query: 305 caggtcaaactaacagacctgtatcagacataccacacatctctaatgtaatgggacagg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 caggtcaaactaacagacctgtatcagacataccacacatctctaatgtaatgggacagg 564

                                                                       
Query: 365 tgtcttgagttgaatcaatgcagactgaagcaattccccaagggggctgccttctggaac 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tgtcttgagttgaatcaatgcagactgaagcaattccccaagggggctgccttctggaac 624

                                                                       
Query: 425 caaaccacacattcaggaggcagacggagacaaatggagtggagggacagagaggcaatc 484
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 625 caaaccacacattcaggaggcagacggagacaaatggagtggagggaaagagaggcaatc 684

                                                                       
Query: 485 agttcaaattctccccgcccccatctctctccctctcccccatctgtgtgtgtgtgtgtg 544
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 685 agttcaaattctccccgcccccatctctctcccgctcccccatctgtgtgtgtgtgtgtg 744

                      
Query: 545 tgtgtgtgtgt 555
           ||| |||||||
Sbjct: 745 tgtctgtgtgt 755


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 559
Length of database: 959
Length adjustment: 10
Effective length of query: 549
Effective length of database: 949
Effective search space:   521001
Effective search space used:   521001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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