BAC Information

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BAC

Clone NameMSMg01-185A10
Chromosome7 (Build37)
Map Location 65,599,736 - 65,600,069
singlet/doubletsinglet
Overlap genenone
Upstream geneGabrg3, Gabra5, Gabrb3, EG668807, LOC434189
Downstream geneAtp10a, LOC621446, LOC668811, LOC668813, LOC668815, EG668818, Ube3a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-185A10.T7 (MSMg01no185_a10.b1)MSMg01-185A10.TJ (MSMg01no185_a10.g1)
ACCAG377138AG377139
length719742
length of high quality
(start - end)
311 (46 - 356)346 (397 - 742)
definitionCHROMAT_FILE: MSMg01no185_a10.b1 PHD_FILE: MSMg01no185_a10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:59:38 2005CHROMAT_FILE: MSMg01no185_a10.g1 PHD_FILE: MSMg01no185_a10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:59:38 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTGTTAAGCTCTGCACCCCATTTTTTAATGGGGTTATTTGATTT
TCTGGAGTGCACCTTCTTGACTTCTTTATATATATATATTGGATATTAGT
CCCCTATCTGATTTATGATAGGTAAAGATACTTTCCCAATCTGTTGGTGG
CCTTTTTGTCTTATTGACGGTGTCTTTTGCCTTACAGAAGCTTTGCAATT
TTATGAAGTCCCATTTGTCGATTCTCAATCTTACAGCACAAGCCATTGCT
GTTCTATTCAGGAAATTTTCCCCTGTGCCCTTATCTTCGAGGCTTTTCCC
CACTTTTTTTTCTATCCCCCCCCCCCTCTCTATAAATTTCACTCACTCAC
TCACTCACTCACCCACTTACTCAACTACAATCACTCACTCACTCAAGAAG
GTGGACTCCAGAAAATCTAATAACCGCATTAAAAATGGCGCTCACAGCTA
ACACAGAATTCTCACCTGATGAATACTGAATGGCTGAGAAGCACCTGAAT
AAATGTTGATCATCATTATGTCTCGGGGAAATGCATATCATAATAACCCT
GAGGTTCCACCTGACACCAGTTCTGATTGGCTAATATCCTAAACTCAGTT
GACACTAGATGCTGTTTAAGATGGGGAGAAAGAGGAACACTCCTCTATTG
TTGTCGGGATTACAGCCCG
NTTTCCTTNNNCTCCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATGAGAGATTT
GAACCTGTAATTTCCCTTCTAAATTCTGCTTCCTTGCCATATTTTGGAGA
GTTATACTTGCTATATACAAGCCGGTTGCCTATAAAGGCCATAGGAGATT
TAAGTGAGGTTGGTGGGGCTTGCTCCTTACTCTGTGGTAGAATTAATTGG
CAATCCAGCTGGCGTGGGGTTTGCTTTGTGGGCAGTTTATAATTATAGTT
TCCATTTCTCTAATAATTACAGGATTCCCAGGGTTCTATTATTAGTGATG
CTTCTCTCTTGTTTGTCCATTTCATCTAATATTTCACACGCCTCTGCCAT
TTACAGGCTATAATTTCCCCTGAGCTTTGTGCTCCCCCCGTGATGACTCC
TTCTCAGACACCCAGTCCTTTCTCTGTCCGTCTCACTTAGGGAGATTATT
TTATTGTCTATAGTCTTTTCAAGACTTCCCTGCTTCTCTATTGTGCATTT
GCTTTCTAATGCATTCATTCATTTCCACATTTCTTTTTATTATTTCCCTT
TTTTTGTCATTTTATTGAGGTGGTCCAAAATTTGCCCTTCTTGATTTTCT
TACAGCAGACTCACTAATTTTCAGCCTTTATTAGGTCCATAAATTCTTTA
ATTAGACTTTCATGTGCAGTTCTACTCTTACAGTTAATCTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no185_a10.g1 MSMg01no185_a10.g1 CHROMAT_FILE:
MSMg01no185_a10.g1 PHD_FILE: MSMg01no185_a10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:59:38 2005
         (346 letters)



>mm_chr7_65599736_65600481
          Length = 746

 Score =  584 bits (302), Expect = e-171
 Identities = 326/334 (97%), Gaps = 1/334 (0%)
 Strand = Plus / Minus

                                                                       
Query: 2   catttacaggctataatttcccctgagctttgtgctccccccgtgatgactccttctcag 61
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 334 catttacaggctataatttcccctgagctttgtgctccccccgtgatggctccttctcag 275

                                                                       
Query: 62  acacccagtcctttctctgtccgtctcacttagggagattattttattgtctatagtctt 121
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 274 acacccagtcctttctctgtctgtctcacttagggagattattttattgtctatagtctt 215

                                                                       
Query: 122 ttcaagactt-ccctgcttctctattgtgcatttgctttctaatgcattcattcatttcc 180
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 214 ttcaagacttcccctgcttctctattgtgcatttgctttctaatgcattcattcattccc 155

                                                                       
Query: 181 acatttctttttattatttccctttttttgtcattttattgaggtggtccaaaatttgcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| 
Sbjct: 154 acatttctttttattatttccctttttttgtcattttattgaggtggtccaaactttgct 95

                                                                       
Query: 241 cttcttgattttcttacagcagactcactaattttcagcctttattaggtccataaattc 300
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94  cttcttgattttcttgcagcagactcactaattttcagcctttattaggtccataaattc 35

                                             
Query: 301 tttaattagactttcatgtgcagttctactctta 334
           |||||||||||||||||||||||||||| |||||
Sbjct: 34  tttaattagactttcatgtgcagttctattctta 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 346
Length of database: 746
Length adjustment: 9
Effective length of query: 337
Effective length of database: 737
Effective search space:   248369
Effective search space used:   248369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)