BAC Information

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BAC

Clone NameMSMg01-185C20
Chromosome7 (Build37)
Map Location 149,532,271 - 149,532,635
singlet/doubletsinglet
Overlap gene6330512M04Rik
Upstream geneEps8l2, B230206H07Rik, Taldo1, LOC100043585, Pddc1, Cend1, Slc25a22, Lrdd, Rplp2, Pnpla2, Efcab4a, Cd151, Polr2l, Tspan4, Chid1, Ap2a2, Muc6, LOC100039649, Muc2, Muc5ac, Muc5b, Tollip, EG623757, Brsk2, 2700078K21Rik, Dusp8, LOC100039728, EG668763, LOC100043616, EG665295, LOC100043617, Krtap5-2, LOC100039757, LOC100039767, EG665305, Krtap5-5, EG640223, LOC672428, LOC100039800, LOC100043627, LOC100043629, ENSMUSG00000038442, Krtap5-1, Krtap5-4, LOC270015
Downstream geneCtsd, Syt8, Tnni2, Lsp1, ENSMUSG00000043795, Tnnt3, Mrpl23, Nctc1, H19, Igf2, Igf2as, Ins2, EG640264, EG624121, Th, Ascl2, Tspan32, R74862, Cd81, Tssc4, Trpm5, Kcnq1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-185C20.T7 (MSMg01no185_c20.b1)MSMg01-185C20.TJ (MSMg01no185_c20.g1)
ACCAG377248AG377249
length693761
length of high quality
(start - end)		312 (45 - 356)359 (403 - 761)
definitionCHROMAT_FILE: MSMg01no185_c20.b1 PHD_FILE: MSMg01no185_c20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:59:48 2005CHROMAT_FILE: MSMg01no185_c20.g1 PHD_FILE: MSMg01no185_c20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:59:49 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCAAGCTCATCCGCTTTAATGATTTTCTAGAACATTGGAACACTGGC
AAAGGCTTAGCTATGTCAAGAAATCAATCCTTAAAGGCACTTATAATAAA
ACAATACTGAAAGAGAGCACGTGGATCCATACACCAGACTAACACAGGGA
TAGAGTTTGAGTATACGGACTATGGGAATGTCAAGGTTCCAGGAGGCATA
GTTTCCTTGAAACTCTTTGCCTCATGAGTGCTTCCAGGCCTCTTGGCCTG
TCAAGCAGACTTCACTGGAGTGGGTGTAGCATAATACACCTATTTTAGAG
CTCTTTTGATTACCCCCGCCACCACACAGGACAATGTCCTCTTGGGTCAG
ATCCACTAACACACCCCCTTAATTATACCTGAAAACGCCCCTTTCTGACA
GATAGGCCACCATTCCATGAGTTCAGTCTCTTCATACCACAAGTTCCAGT
CACACATAAGTGGAATTGATATAAACATGAGTAATTTTTACAACTTTGCT
GTCACAGGAAAGACATGTTATATTCATAGCATCAGTCGGACATCCAGATG
GTGGCATTCAAGAGAAGTCAGTGTGCTGATCTGGAGGTCAGAACACTCAT
ATATACAGAAGTTACTAACTCAGGCAATAGCAACAATAGATAA

CTTCCTTAACTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGGCCAGTGAGAG
AGCTAAGAGAGAAAGAAAGAAGAGAGAAAGGAAGGAAGGAAGGAAGAAAG
AGAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA
AGAAAGAAGAAAGAAAGAGAGAGAGAGAGAAAGAAAGAGAGCAAGAAGAA
AAAATGATGACCCGTGCCAAAGGAATGACATTCAAGTTTGACCTTCGGCG
TCCATAGCACATCCACACACATACATGTGTACCCATGCATATACACAAAC
ACATGAATACATGCATGTTTGCCCACCCTCTTTTTTAGCATACACACCCC
CACATACATATGTGCCCACCTATCTAGACACCTAAACACAAGCACATGTA
TGTGCCCACCCATACATGAATATACGTACACACATGGACACATGTATGTG
TACCTGACACACAGAAACATATACACAAAATGCCACTGTTTCATATGTTT
AGCCTGAGATTTCAGTTAAAGCAGTTCCTAGCAGCGGTGCCATCCGCACA
AGATTAAGCCAGCCAAAATTTCAACATTTAAGAATAATTTCGCCGGGTGG
TGGTGGCACACACCTTTAATCCCAGCACTTGCAGAGGCAGGCAGATTTCT
GAGTTCAAGGCCAGACTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGC
TATACAGAGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no185_c20.g1 MSMg01no185_c20.g1 CHROMAT_FILE:
MSMg01no185_c20.g1 PHD_FILE: MSMg01no185_c20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:59:49 2005
         (359 letters)



>mm_chr7_149532072_149532830
          Length = 759

 Score =  561 bits (290), Expect = e-164
 Identities = 345/366 (94%), Gaps = 8/366 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   catacatatgtgcccacctatctagacacctaaacacaagcacatgtatgtgcccaccca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 catacatatgtgcccacctatctagacacctaaacacaagcacatgtatgtgcccaccca 505

                                                                       
Query: 61  tacatgaatatacgtacacacatggacacatgtatgtgtacctg-acacacagaaacata 119
           |||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| |
Sbjct: 504 tacatgaatatacgtacacacacggacacatgtatgtgtacctgtacacacagaaacaca 445

                                                                       
Query: 120 tacacaaaatgccactgtttcatatgtttagcctgagatttcagttaaagcagttcctag 179
           |||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||
Sbjct: 444 tacacaaaatgccactgtttcacatgttcagcctgagatttcagttaaaacagttcctag 385

                                                                       
Query: 180 cagcggtgccatccgcacaagattaagccagccaaaatttcaacatttaagaataatttc 239
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 384 cagcggtgccatccacacaagattaagccagccaaaatttcaacatttaagaataatttt 325

                                                                       
Query: 240 gccgggtggtggtggcacacacctttaatcccagcacttg-----cagaggcaggcagat 294
           ||||||| |||||||| ||| ||||||||||||||||| |     ||||||||||| |||
Sbjct: 324 gccgggtagtggtggcccacgcctttaatcccagcactggggaggcagaggcaggcggat 265

                                                                       
Query: 295 ttctgagttcaaggccagac-tggtctacagagtgagttccaggacagccagggctatac 353
           ||||||||||||||||| || |||||||||||||||||||||||||| ||||||||||||
Sbjct: 264 ttctgagttcaaggcca-acctggtctacagagtgagttccaggacatccagggctatac 206

                 
Query: 354 agagaa 359
           ||||||
Sbjct: 205 agagaa 200


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 359
Length of database: 759
Length adjustment: 9
Effective length of query: 350
Effective length of database: 750
Effective search space:   262500
Effective search space used:   262500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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