BAC Information

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BAC

Clone NameMSMg01-185F21
Chromosome7 (Build37)
Map Location 95,315,234 - 95,315,636
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC621477, Nox4, Tyr, Grm5
Downstream geneCtsc, LOC100039756, Rab38, LOC100039924, LOC666598, EG621562, Tmem135
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-185F21.T7 (MSMg01no185_f21.b1)MSMg01-185F21.TJ (MSMg01no185_f21.g1)
ACCAG377380AG377381
length776786
length of high quality
(start - end)
406 (141 - 546)293 (89 - 381)
definitionCHROMAT_FILE: MSMg01no185_f21.b1 PHD_FILE: MSMg01no185_f21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:00:02 2005CHROMAT_FILE: MSMg01no185_f21.g1 PHD_FILE: MSMg01no185_f21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:00:02 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCGCCCCNACCAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXCGCGGAATTCAGGAGAATAGAAACTAAGAAAGGGCAGTGTA
AGTTAGGTGATTTCCACTCTCTGATTCCTGATTTCTCAGGCAGTGAAACT
AGGCATGATTCAAAATCTCAAATGGAAGACTTCCTCACTCACACATCTGG
TAGATTTTGCTGGTAGTAAGCTGTCTGAGTCGTGCCAGCATATGAACTCA
GAGAAATATATCTGGGATATAGATGCTTCAGGCTTCTCATGTACTGTGAC
TAAATTCCAGGAGTGATTGTCCCAAGAGAATTAAAATGAAGATGAACCAA
CATCAGAGATAATATAAAATAGCAGCATCCTAACCAGTATGAAGCAAAGA
AATATCAACTATGAGAGAAATGCCACATTGACCCACACATAGAAATGGTA
GGAGATGTTTCTGTGGCTATTGTTGGATAATAACTTCATCACCAATGGTA
TTTCTCAACTAACTGATACATAATTCCAAAGCTTAACATGATATAAGTTG
TCTCAGTATTTCTCATGTCTTTTCCGGTCGATCTATTGCTTTTTCTTGGC
TCTCTCGACTCCTGCCTTGTCCCACTCCTGTATCGCTTTTAGATCTTAAC
ATTTCTGATGTACCTTACCTTATGTCTGCTCCTATCCCATTTTGCCCCCA
TTTCTTACTTCCTTCATCCACCTTTTCTACCTTCCCTCTTTCCTTCACTC
CACCTTTAACTCCTCTTTTTTCTTTG
CCCCCTTNTTCTCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCATATACTGTG
GCATAGAGCCTTCACAGGACCAAGGGCCTCTCCTCCTGTTGATAACAGAC
TAGGTCATCCCTCTGCTATACATGCAGCTGCAGCCATGAGTCCCACCATG
TGTTTTATTTGGTTGGTGGTTTAGTCCCTGGGAACTCTGGGGGTACTGGT
TAGTTCATATTGTTGTTCCTCCTATGGGGCTGCAAACCCCTTCAATTCCT
TGGGTCCTTTCTCTAGCTTCTTCATTGGGGACCCTGTGCTCAGTCCAATA
ATGGCTGTGAGCATCCACTTCTGTATTTGTTAGTCCCCCCCCCACCCCCT
CAGGAGACAGCTATATCAGGCTCCTATCATCCCCCCCTTGAATAAAAACA
AAAATAGAGTCTTGAGTTTGGTGATTGTATATGGGATGGATCCCCAGGTG
AGTCATTCTCTGGTTGGCCATTTTGTTTCTGTATTTCCTTTTATGGTAAT
TCTTGTTTCATCTCTAAACATGGTTTTCCGTTTTTCTACTTTTACCCTCT
CTTTTTCATTTTCCTTTTTTCTTTCCTCCAATACTCTTGTCCTTTTTTTT
TTCCCTCTCCACTTTTTATCTCCTATTTCTATTACTTTCCTTCCTTCCTT
TTCTTATCCTTTGTCTTCTTCACTGAATTTACCCTTACCTTATACCCTAT
TTTTTCCCTCTCTTATTCATGTCTCACCTTATAGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no185_f21.b1 MSMg01no185_f21.b1 CHROMAT_FILE:
MSMg01no185_f21.b1 PHD_FILE: MSMg01no185_f21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:00:02 2005
         (406 letters)



>mm_chr7_95315034_95315839
          Length = 806

 Score =  733 bits (379), Expect = 0.0
 Identities = 397/403 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagtgaaactaggcatgattcaaaatctcaaatggaagacttcctcactcacacatctgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagtgaaactaggcatgattcaaaatctcaaatggaagacttcctcactcacacatctgg 260

                                                                       
Query: 61  tagattttgctggtagtaagctgtctgagtcgtgccagcatatgaactcagagaaatata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tagattttgctggtagtaagctgtctgagtcgtgccagcatatgaactcagagaaatata 320

                                                                       
Query: 121 tctgggatatagatgcttcaggcttctcatgtactgtgactaaattccaggagtgattgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctgggatatagatgcttcaggcttctcatgtactgtgactaaattccaggagtgattgt 380

                                                                       
Query: 181 cccaagagaattaaaatgaagatgaaccaacatcagagataatataaaatagcagcatcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cccaagagaattaaaatgaagatgaaccaacatcagagataatataaaatagcagcatcc 440

                                                                       
Query: 241 taaccagtatgaagcaaagaaatatcaactatgagagaaatgccacattgacccacacat 300
           |||||||||||||||||||||||||||||||||||||||||||||||||||   | | ||
Sbjct: 441 taaccagtatgaagcaaagaaatatcaactatgagagaaatgccacattgaaagaaatat 500

                                                                       
Query: 301 agaaatggtaggagatgtttctgtggctattgttggataataacttcatcaccaatggta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agaaatggtaggagatgtttctgtggctattgttggataataacttcatcaccaatggta 560

                                                      
Query: 361 tttctcaactaactgatacataattccaaagcttaacatgata 403
           ||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 561 tttctcaactaactgatacataattccaaagtttaacatgata 603


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 406
Length of database: 806
Length adjustment: 9
Effective length of query: 397
Effective length of database: 797
Effective search space:   316409
Effective search space used:   316409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)