BAC Information

Click to search

BAC

Clone NameMSMg01-185G05
Chromosome7 (Build37)
Map Location 121,394,229 - 121,394,536
singlet/doubletsinglet
Overlap geneCopb1
Upstream geneArntl, Btbd10, Pth, LOC100042736, Mlstd2, EG434228, Spon1, Rras2, LOC668451
Downstream genePsma1, 4933406I18Rik, Pde3b, Cyp2r1, Calca, LOC100043295, Calcb, Insc, EG627967, LOC668472
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-185G05.T7 (MSMg01no185_g05.b1)MSMg01-185G05.TJ (MSMg01no185_g05.g1)
ACCAG377395AG377396
length822704
length of high quality
(start - end)
312 (103 - 414)647 (58 - 704)
definitionCHROMAT_FILE: MSMg01no185_g05.b1 PHD_FILE: MSMg01no185_g05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:00:04 2005CHROMAT_FILE: MSMg01no185_g05.g1 PHD_FILE: MSMg01no185_g05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:00:04 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTCCTCTTCCCCGGTGGGGNGNTAATGCTGACCCCTAANNATTTTTTTCC
CCCCCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCAGAGCCTCCTGAGTGCTTGGCAAGTACTATATAGTTAA
CATGTCCATAGCCCCTAGCACTTCACCACGACAGGGGCCTAAGCTGCCCA
GACTAGTTTTAAAAATGTGACCCACTGTTTCAGCCCTCTGAACAGTTGGA
ATTCCAAGTACATAATGGCCCTTATATACTTTAAAGGAGCAGAGCATGAG
TTTTCAAACTTCAAACATATATGTTTCTTTTGCAAAAATGTTTTCAAGAT
GAAAATATAAACATGTAGGGGATGTTCATGTTTACTTTTGTATTAACTTC
ATTTGTTTGCTTATTTCTATTTATCACCCACCCACAATTGCCAGATATAT
TTAAGTATCATACATTACCCCCCCCCCCACCATATGGAGTGTTTGAAGAC
CCCGTAATTATGTGACTTTATTTCTTTACCGCCCTTACCCTGGCCCATTA
TCCTATTTCTATACATGGATTGTTCCCGTCTAACGTTACATGACATTTTC
TTTTTCTTCATTTTTAAGAAGCCCTCCACAAACTCTTTCCCCCAGATTCT
CTCAGTTTATTTCTGTTCAATCGCCGCCCCCTCCTGCTATATCGTCTTTT
TTTTTTACACCTTCCTTGATCCTTCTGTGTATTACCCTTTCTTTTCTCTT
TCCCCCCGTTTTATTTTCCCCTACCCTTTGTTCTCTACTCCTCTCTCCCC
TTCCATCTCTTACTCCCCTCAG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXAACACACCACTTTCACCAATGGACAGATCATGGAAAGAGAAAC
TAACCAGGGACACAGTGAAACTAACAGAAGTTATGAAACAAATGGATCTG
ACAGATATCTACAAAACATTTTATCCTAAAACAAAAGGATATACCTTCTT
CTCAGTACCTCATGGTACCTTCTCCAAAATTGACCACATAATTGTTCACA
AAACAGGCCTCAACAGATACAAAAATATTGAGATTGTCCCATGCATCCTA
TCAGATCACCATGGACTAAGGCTGATCTTCAATAACAACATATTTAATAG
AAAGCCAACATTCACGTGGAAACTGAACAACAACCTTCTCAATGATACCT
TGTACAAGGAAGGTATAAAGAAATAAATTAAGGATTTTTTAGAGTTTAAT
GAAAATGAAACCACAACATACCCAAACTTATGGGACACAATGAAAGCATT
TCTAAGAGGAAAACTCATAGCTCTGAGTGGCTACAAAAAGAAACTAGAGA
GAGCACACATTAGCAGCTTGGCAACACACCTAAAAGCTCTAGAACAAAAG
GAAGCAAATTCACCTAAGAGGAGTAGATGGCAGGAAATAAACTCAGGGGC
AAAATTAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATCAACCAAAC
GAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no185_g05.b1 MSMg01no185_g05.b1 CHROMAT_FILE:
MSMg01no185_g05.b1 PHD_FILE: MSMg01no185_g05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:00:04 2005
         (312 letters)



>mm_chr7_121394025_121394736
          Length = 712

 Score =  580 bits (300), Expect = e-170
 Identities = 306/308 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagagcctcctgagtgcttggcaagtactatatagttaacatgtccatagcccct 64
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagagcctcctgagtacttggcaagtactatatagttaacatgtccatagcccct 264

                                                                       
Query: 65  agcacttcaccacgacaggggcctaagctgcccagactagttttaaaaatgtgacccact 124
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agcacttcaccaggacaggggcctaagctgcccagactagttttaaaaatgtgacccact 324

                                                                       
Query: 125 gtttcagccctctgaacagttggaattccaagtacataatggcccttatatactttaaag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gtttcagccctctgaacagttggaattccaagtacataatggcccttatatactttaaag 384

                                                                       
Query: 185 gagcagagcatgagttttcaaacttcaaacatatatgtttcttttgcaaaaatgttttca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gagcagagcatgagttttcaaacttcaaacatatatgtttcttttgcaaaaatgttttca 444

                                                                       
Query: 245 agatgaaaatataaacatgtaggggatgttcatgtttacttttgtattaacttcatttgt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 agatgaaaatataaacatgtaggggatgttcatgtttacttttgtattaacttcatttgt 504

                   
Query: 305 ttgcttat 312
           ||||||||
Sbjct: 505 ttgcttat 512


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 312
Length of database: 712
Length adjustment: 9
Effective length of query: 303
Effective length of database: 703
Effective search space:   213009
Effective search space used:   213009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)