BAC Information

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BAC

Clone NameMSMg01-185G21
Chromosome7 (Build37)
Map Location 116,816,273 - 116,966,554
singlet/doubletdoublet
Overlap geneLOC100042582, D930014E17Rik, BC051019, Ascl3, Tmem9b, 4930431P19Rik, Nrip3, Scube2
Upstream geneOlfr511-ps1, Olfr512, Olfr513, Olfr514, Olfr515-ps1, Olfr516, Olfr517, Olfr518, Olfr519, Nlrp10, Eif3s5, BC049265, Tub, Ric3, Lmo1, Stk33, EG668320, 1700095J03Rik, Trim66, Rpl27a, St5
Downstream genePhxr5, Rab6ip1, Tmem41b, Ipo7, AA474408, Zfp143, Wee1, Swap70, EG668368, Sbf2, LOC668246, Adm, B430319F04Rik, Ampd3, Rnf141
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-185G21.T7 (MSMg01no185_g21.b1)MSMg01-185G21.TJ (MSMg01no185_g21.g1)
ACCAG377427AG377428
length717732
length of high quality
(start - end)		316 (45 - 360)234 (126 - 359)
definitionCHROMAT_FILE: MSMg01no185_g21.b1 PHD_FILE: MSMg01no185_g21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:00:07 2005CHROMAT_FILE: MSMg01no185_g21.g1 PHD_FILE: MSMg01no185_g21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:00:07 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(116,816,273 - 116,816,584)(116,966,321 - 116,966,554)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCTTCCCATAAATTATTTACAAATAGACCATGGAACTGGAATGAGA
AATAGTGAAAATTGACTTTCAAAATTTAGAATTGAAAATTGAAAATTTTG
GCGGAGTGATAGCACACAGCTTTAATCCCAGCACTAGAGAAGCAGAGGCA
AAAAGGTCTCTTTTTTGAGTTCAAGGCTAGCCTGGTCTACACAGCCAGTT
CCAGGGTAGCCAGGTCTACAAAGAAAGACCTTGTCTCCAAACAGAACAAA
ATTTACAATTTTAGGGCTGGGGGTATAGCACACGGGAGCCTCTAGGTTTA
CTCTGTGATCTCACTTTATAACTTTACATACAGTAGTTGCATTTCAAAAG
AACCAATGTATGCCCCCCAACATAAGCAGGCTCTAAAGCTAAGGCCTGTT
TCAAAGCCCAAGCCAATTGATTGTCACATATCCTAAAGAGATATTTACTC
AGCTGCAAGAAGATAAGCACTAAAAATAATAAGTTTAAGATTTATCCTGG
AAATAATTCAACTTGCTCATGATTGAGCACAACTAGTGACAAGAACCAAA
GGAATATAAAACTACTGTTCCTTTTCCAAAAGAGGATGTCAGAGATGAAT
TGTAGTATCATGTCATTAGCTCTTTATCATCATCATATTGACACCAGAGA
GGATGTCTGCACTGTTG

CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGGAAACCTAGTGTCAAGGTCTGT
GGACCCTGAGAGATCCTTATACCAAAAGCCCAAGAAGAGGAGCAGGCCTT
ACTAAATGACTTAGGCTGCGTGGCCACAGACCTATGGGGGAACACCCAAT
AGAGCTAGGTATACGAATGTGTCGCTGATATGCCAATCAGCTAAATTTGG
TTGGGTTTGTTTCTTAAAGAGGCAGTATGTTTCCCAAGAGCTTTCACAAA
CTCTAGATGAGTCTGGTACCCAACATGGGACCAGGTCAGGCAATGATGTG
GAAGACTTTTCTGTTTGATCACCACCGCATAGGAATTGTTAGTGAGGGGG
GATTAGATATAAAGCCCCCACAGAACAAATGACTAGGGGGGGGGTGAGAG
GCCATGATAATGCCCACCAGGTAAAGGCGCTCGTAGTCAGGGCTGGCCAC
TGAGTCTGATGTCTGTGATGCTCAGGGTGCTAGGAGAGAACCACTGAATG
TTGTTCAGGCCATATGGATATTTTTGATAATCATCAGATATCTTCTTTGA
CCCCCACGGTACTTCCCCCTATGCTTTGCCCCCGTTTTCCCTCCACACCA
GCCCACCCCCATTACAGCCCCCTTTTCCGTTCTTTTCTCCCATCTCCGTT
TCCCCCGCCCCACCCCTCGCTCTGACTCCCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no185_g21.b1 MSMg01no185_g21.b1 CHROMAT_FILE:
MSMg01no185_g21.b1 PHD_FILE: MSMg01no185_g21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:00:07 2005
         (316 letters)



>mm_chr7_116816069_116816784
          Length = 716

 Score =  580 bits (300), Expect = e-170
 Identities = 309/312 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctcttcccataaattatttacaaatagaccatggaactggaatgagaaatagtga 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctcttcccataaattatttacaaatagaccatggaactggaatgagaaatagtga 264

                                                                       
Query: 65  aaattgactttcaaaatttagaattgaaaattgaaaattttggcggagtgatagcacaca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aaattgactttcaaaatttagaattgaaaattgaaaattttggcggagtgatagcacaca 324

                                                                       
Query: 125 gctttaatcccagcactagagaagcagaggcaaaaaggtctcttttttgagttcaaggct 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 325 gctttaatcccagcactagagaagcagaggcaaaaaggtctcttttttgagttcaaggcc 384

                                                                       
Query: 185 agcctggtctacacagccagttccagggtagccaggtctacaaagaaagaccttgtctcc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 agcctggtctacacagccagttccagggtagccaggtctacaaagaaagaccttgtctcc 444

                                                                       
Query: 245 aaacagaacaaaatttacaattttagggctgggggtatagcacacgggagcctctaggtt 304
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 445 aaacagatcaaaatttacaattttagggctgggggtatagcacacgggagcctctgggtt 504

                       
Query: 305 tactctgtgatc 316
           ||||||||||||
Sbjct: 505 tactctgtgatc 516


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 716
Length adjustment: 9
Effective length of query: 307
Effective length of database: 707
Effective search space:   217049
Effective search space used:   217049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no185_g21.g1 MSMg01no185_g21.g1 CHROMAT_FILE:
MSMg01no185_g21.g1 PHD_FILE: MSMg01no185_g21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:00:07 2005
         (234 letters)



>mm_chr7_116966121_116966754
          Length = 634

 Score =  453 bits (234), Expect = e-132
 Identities = 234/234 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   aagcccaagaagaggagcaggccttactaaatgacttaggctgcgtggccacagacctat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 aagcccaagaagaggagcaggccttactaaatgacttaggctgcgtggccacagacctat 375

                                                                       
Query: 61  gggggaacacccaatagagctaggtatacgaatgtgtcgctgatatgccaatcagctaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 gggggaacacccaatagagctaggtatacgaatgtgtcgctgatatgccaatcagctaaa 315

                                                                       
Query: 121 tttggttgggtttgtttcttaaagaggcagtatgtttcccaagagctttcacaaactcta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 tttggttgggtttgtttcttaaagaggcagtatgtttcccaagagctttcacaaactcta 255

                                                                 
Query: 181 gatgagtctggtacccaacatgggaccaggtcaggcaatgatgtggaagacttt 234
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 gatgagtctggtacccaacatgggaccaggtcaggcaatgatgtggaagacttt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 634
Length adjustment: 9
Effective length of query: 225
Effective length of database: 625
Effective search space:   140625
Effective search space used:   140625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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