BAC Information

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BAC

Clone NameMSMg01-185G23
Chromosome7 (Build37)
Map Location 87,027,820 - 87,028,043
singlet/doubletsinglet
Overlap geneAp3s2
Upstream geneIsg20l1, Isg20, Acan, Hapln3, Mfge8, Abhd2, Rlbp1, BC025462, Polg, AI854517, Rhcg, 5730590G19Rik, Plin, Pex11a, EG626359, EG665900, Mesp1, Mesp2, Anpep
Downstream gene2610034B18Rik, Zfp710, Idh2, Sema4b, Cib1, D330012F22Rik, LOC100042374, LOC100042379, Ttll13, Ngrn, Vps33b, Prc1, Rccd1, Unc45a, Hddc3, Man2a2, Fes, Furin, LOC384647, Blm, Crtc3, Iqgap1, LOC100042402, Zscan2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-185G23.T7 (MSMg01no185_g23.b1)MSMg01-185G23.TJ (MSMg01no185_g23.g1)
ACCAG377431AG377432
length853762
length of high quality
(start - end)
295 (103 - 397)224 (188 - 411)
definitionCHROMAT_FILE: MSMg01no185_g23.b1 PHD_FILE: MSMg01no185_g23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:00:07 2005CHROMAT_FILE: MSMg01no185_g23.g1 PHD_FILE: MSMg01no185_g23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:00:07 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCCCCCTCCCCAATCATATTTTTTTTTTTTCCTCCCTAGTTTTTAACAAA
ACNAACATCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCCTGACGTTCAGAGGGAGCTGGCCAGAGAGGGGATCACC
TAGCACTGGAAATGGAACCAGTCTGCCCCAAATAGGGAGACATTATTGAA
AAAAAGGAGCTGGGCAGTGGTGGCGCACGCCTTTAGTCCCAGCACTTGGG
AGGCAGAGGCAGGTGGATTTCTGAGTTCGAGGCCAGCCTGCTCTACAGAG
TGAGTTCCAGGACAGCCAGAGCTACACAGAGAAACCCTGTCTCGAAAAAC
AAAAAAACAAAAAAAAAAGGAGGAAGAGGAGGAGAGAGAAGAGGAGGAGG
ACGAGGAGAGAGATTTTTTTTTTTTCCCCCCCCCCCCCTCGGAATTTGAA
TGATTTTTTTTATCCCTTATCCCTTCCCCCCCAATAAAAATAAAAAACCT
TTCTTGGCGCGGGGGTTGATTTATTTTCCCTCGCACCTTTTATTATATCC
CACTCAACCCCGTTATCTAGTCCATTAGTTTCCCTCCTTTTCTAGAATAT
TTATAATTGACACTCAATTTCATGAAAAATGTACCATCACCCGCCAACAA
CCGCCCTTTTTCTCAATACCCACATGTTATTTTCCTTTTTATTTTTCTTG
TCACTCACCATTTCCAGCGCGCTTTGTTTCTTTTATTTCATTATCCCCTC
TCCCTCTCCTCATTTCTTTTTCCCCCACTTTCTCTTTTACCCATATTATT
CTCCCCCTTCCTTTCTTTTTTTTTTCCTCTCTCCTTGCCTCTATTTTGCC
TCC
TTTTTTTTTCTTCCTTTTTTCCCCCTCTCCCATTCTCTCAACCACCAAAN
CACCCCTATGATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCATGACTATAAACCAGT
TATGATGGCACCCAGGGCTCTCTTTGCACACCTATCTGTCTCCCTGTGTA
GTGGTTGCATTGCCTCTGCTCCATCCCGGTAGTGCATCGAGATTTGGTTT
TGCTTAGAGAACTGCTGGCTGGCTGGAAACTGTGAGCTGCACACTAAGGA
GAGCATTTAGACCATTTCAGCTGCTTAGATCTACTTAATGCCAGCCAGTG
TGATGACAGTCTAATGGATGACAGAAAAGCGTCTCTACTTATGTGGGGCC
CAGCGTGTAGCAGGCACTATCAAAGCGTTGTTTAGTTCTCCATCTAGGTA
TCTCACCCGGCCATTTATTCCCGACTTTTGGAAGGAAGCTGAAGTGCTGA
GAAAATAATTTGCCAAAGACCACCTAGCTAACAAACAGCAGGGCTAGAAT
CTAAGCATGACCTGTCTGAGTTGGAAGCCTCAGCCACCACCTCATTGTCT
TGAGCGAACCAAACCCTACTGCCATTGCTGATAGAAGACCATGAAGTCTT
GTGGTCTCCCGTGAGGGGCTGGCTGTGTCATGAATCAAAATGTGAACCGT
CTGACCACTCTGCTGTTGCCCCCGGAGCAAACTACTGTGCTGAGCTCTGA
GTCTTGATGCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no185_g23.g1 MSMg01no185_g23.g1 CHROMAT_FILE:
MSMg01no185_g23.g1 PHD_FILE: MSMg01no185_g23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:00:07 2005
         (224 letters)



>mm_chr7_87027620_87028243
          Length = 624

 Score =  433 bits (224), Expect = e-126
 Identities = 224/224 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   gtctccctgtgtagtggttgcattgcctctgctccatcccggtagtgcatcgagatttgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 gtctccctgtgtagtggttgcattgcctctgctccatcccggtagtgcatcgagatttgg 365

                                                                       
Query: 61  ttttgcttagagaactgctggctggctggaaactgtgagctgcacactaaggagagcatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 ttttgcttagagaactgctggctggctggaaactgtgagctgcacactaaggagagcatt 305

                                                                       
Query: 121 tagaccatttcagctgcttagatctacttaatgccagccagtgtgatgacagtctaatgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 tagaccatttcagctgcttagatctacttaatgccagccagtgtgatgacagtctaatgg 245

                                                       
Query: 181 atgacagaaaagcgtctctacttatgtggggcccagcgtgtagc 224
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 atgacagaaaagcgtctctacttatgtggggcccagcgtgtagc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 224
Length of database: 624
Length adjustment: 9
Effective length of query: 215
Effective length of database: 615
Effective search space:   132225
Effective search space used:   132225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)