BAC Information

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BAC

Clone NameMSMg01-186D04
Chromosome7 (Build37)
Map Location 112,827,447 - 112,827,762
singlet/doubletsinglet
Overlap geneDnhd1
Upstream geneGA_x5J8B7W3SPQ-80592-80214, Olfr661, LOC625495, Olfr662-ps1, Olfr663, Olfr664, EG625530, LOC100042613, LOC233637, Dub1a, Dub1, Olfr665, Olfr666, Olfr667, Olfr668, Olfr669, EG545987, Olfr670, Olfr671, Olfr672, GA_x5J8B7W6B6J-189947-189022, Olfr674-ps1, Olfr675, Olfr676, Olfr677, LOC667987, Olfr678, Olfr679, Olfr680-ps1, Olfr681, Olfr682-ps1, Olfr683, Olfr684, Olfr685, Olfr686, EG668035, Olfr688, Olfr689, Olfr690, Olfr691, Olfr692, EG545989, 4632419K20Rik, Cnga4, EG244189, Cckbr, Prkcdbp, Smpd1, Apbb1, Hpxn, Trim3, Arfip2, Fxc1
Downstream geneLOC100042811, LOC672646, 1500003O22Rik, Ilk, Taf10, Tpp1, Dchs1, Mrpl17, 9130208D14Rik, LOC626055, LOC100042856, LOC100042047, EG668108, EG668117, Gvin1, LOC672660, LOC100042097, LOC668128, LOC634394, EG209380, EG668139, Gm1966, LOC100042141, Olfr693
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-186D04.T7 (MSMg01no186_d04.b1)MSMg01-186D04.TJ (MSMg01no186_d04.g1)
ACCAG377957AG377958
length749730
length of high quality
(start - end)
320 (45 - 364)241 (77 - 317)
definitionCHROMAT_FILE: MSMg01no186_d04.b1 PHD_FILE: MSMg01no186_d04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:01:07 2005CHROMAT_FILE: MSMg01no186_d04.g1 PHD_FILE: MSMg01no186_d04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:01:07 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTAACACTACTGATATTTTGTTTTTGGTTTCTTGGTTTTTTTGAGA
CAGGGTTTCTCTCACTTTGTAGACCAGGCTGGCCTATGAACTCAGAAATC
TGCCTGCCTCTCCCTCCTAAGTGCTGGGATTAAAGGCGTGCGCCATCATG
CCCGGCAACACCACTGATTTTTATTCTCAAGTATTCTCTGCTCCATTTTG
CTTCCATAGGAACCCTGGCACCAGGGCAGCCCACCACATTGTACAATATC
TACACAGAGTATAACATTCTCTTGCCTAGTCTTAGCCCTCTTGACATTGA
TGATTTAGGTGCTGTATTATTAACGAACGCTGCAGCTGGGGTGTGCTCTG
TGCAGATTTTCCCTTTTCCGTTCAATGAATGAGAGCCTATGTTAGTGAGT
GATTTGCCGATTAACTATACAATXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXTTCTCCTTATTTATCTAACCCCTTATTTCTTAGTCCTTTGATTATATC
CCTCTCACCTGAAATCACCTGTTGTTAAATGTCCCCCATATTATACCTAT
CCCCTACATACATTAACTTATATTTTTTACGAATTAACTCTTACCTCTG
GAATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCTAAAGGAGTATGTGTGTGTGTG
TGTGTGTGTGTGTTGGGCGGATTTGTTAAAATGGCCTACAGGTTGTGATC
CAGCTAGTCCAACAGTGGCTATCTACGAAAAGAAGGTCCAAGAATCCAGC
AGCTGTTGTTCAGTCCACACTGCTGGATGCCTCAGCTGGTCTTCAGTATA
TATCAGAATCCCAAAGAAATAGGCTATAATCACAGTGAAGGAATGGACTT
GCCAGCTAGAGTGAGATGTTTTTTTATGCAATGTCCTTTATATGGGACCC
CAAGAGAATTTATTTTCCCCCCCCCCCCCGCGTCTTCCCACTTCACAAGA
GTTATATTTAAAGACCCCCCCTAACAAATAAAAAGATCTGGTTGGAAGTG
CGTCTTCCCTTTTCAAATGACTTAATTTTACAGATTCTTGAATGCGCCTT
CCATATGTAATAGAGATGCCTCCCAATACCATTTATCACACGTTATATGC
ACGACTTCCGACTTTTTATATAAAGCGCTCTCCGCTTTCTTTCCCTTACG
CGAGACCCCACTTGCCCGCTATACTCCCCCAATTTCCTTCACCTTTGCTA
TATTTTCGCCCCCATATGTTCACCCCCTTTCTCCCCACTGTTCCCTACAC
CTTATTTTCCCCTCTTCTTCTTCCCCCCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no186_d04.b1 MSMg01no186_d04.b1 CHROMAT_FILE:
MSMg01no186_d04.b1 PHD_FILE: MSMg01no186_d04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:01:07 2005
         (320 letters)



>mm_chr7_112827243_112827962
          Length = 720

 Score =  611 bits (316), Expect = e-179
 Identities = 316/316 (100%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttaacactactgatattttgtttttggtttcttggtttttttgagacagggttt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttaacactactgatattttgtttttggtttcttggtttttttgagacagggttt 264

                                                                       
Query: 65  ctctcactttgtagaccaggctggcctatgaactcagaaatctgcctgcctctccctcct 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ctctcactttgtagaccaggctggcctatgaactcagaaatctgcctgcctctccctcct 324

                                                                       
Query: 125 aagtgctgggattaaaggcgtgcgccatcatgcccggcaacaccactgatttttattctc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aagtgctgggattaaaggcgtgcgccatcatgcccggcaacaccactgatttttattctc 384

                                                                       
Query: 185 aagtattctctgctccattttgcttccataggaaccctggcaccagggcagcccaccaca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aagtattctctgctccattttgcttccataggaaccctggcaccagggcagcccaccaca 444

                                                                       
Query: 245 ttgtacaatatctacacagagtataacattctcttgcctagtcttagccctcttgacatt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ttgtacaatatctacacagagtataacattctcttgcctagtcttagccctcttgacatt 504

                           
Query: 305 gatgatttaggtgctg 320
           ||||||||||||||||
Sbjct: 505 gatgatttaggtgctg 520


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space:   221121
Effective search space used:   221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)