BAC Information

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BAC

Clone NameMSMg01-187A19
Chromosome7 (Build37)
Map Location 6,633,395 - 6,633,989
singlet/doubletsinglet
Overlap geneZim1
Upstream geneLOC100041627, LOC100041637, V1rd1, LOC100041647, V1rd11, LOC100041666, V1rd6, EG384525, EG269859, Nlrp4c, Zfp787, Zfp444, Galp, Zfp371, EG627821, Zfp667, Zfp583, LOC100042467, LOC100042459, Zfp78, Zfp28, LOC100042450, Olfr1344, GA_x5J8B7W3DQU-679632-679375, Olfr1336, Olfr1346, Olfr5, Olfr1347, Olfr1348, Olfr1349, LOC665328, Olfr1350, Zim2
Downstream genePeg3, Usp29, LOC627961, Aurkc, LOC628030, LOC100041822, 5730403M16Rik, 2810409K11Rik, Vmn2r-ps35, Zfp418, BC023179, 6430701C03Rik, Clcn4-2, V2r15, LOC100041866, LOC100042577, Vmn2r31, Vmn2r-ps36, V2r5, LOC100041883, EG628117, Vmn2r33, LOC665470, EG665474, EG628368, LOC100042636
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-187A19.T7 (MSMg01no187_a19.b1)MSMg01-187A19.TJ (MSMg01no187_a19.g1)
ACCAG378539AG378540
length761861
length of high quality
(start - end)
597 (45 - 641)---
definitionCHROMAT_FILE: MSMg01no187_a19.b1 PHD_FILE: MSMg01no187_a19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:02:14 2005CHROMAT_FILE: MSMg01no187_a19.g1 PHD_FILE: MSMg01no187_a19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:02:14 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTCTTAACGCATACATTAGCTGAGTGAGACATTGTGTGTTTATAGT
CCCAGCACTTAGGGAGCTGAGGCAGGAGGATTCCAAGAACAAATTCAGGC
TAGGCTACATAGCAAGAATGTGTTTCATTCTTACCCCAGCTGCATATATT
ATCTTAATGAAAACCATCTACATGTATTCTTAAGGTGAAGTGTTGGGTAA
TGAGCAAGTGATTCAGAAAAGCACTGTTATTTTTATAAGTCAACATAGGG
TTGTGAATTAGCAATGATATTTTTAAAAGATTAAGATCAGGTAGGAACCA
ATCTGCTAAAAAGCAATGCTATTAACATCTTTTAAACAATTAAGACACTG
AGCTATACCCACCAAAAGGAAAGTTAGGGCCTGGGGTGATGGCTCAATGG
GTAAGAGCACTTGATCTGCAAGCATGAGGGACTGAGTTCAAATCCCCAGT
ACCCACTAGAAAACACAGGCATAGCTACATGCCTGTAACCTCATCATTAG
GGGGCAGAGACTGAAGGATTCTGAGAACTTACTAGCTGGGCAGGATAGCC
AGAAAGGTTAGCTTCTAACTCAGCAAGAGGCTCTCTAGAAATAAAATAAA
AAGGCAGAAGACACATGATGACTTGTTCTGGCCTCTAAGTGTACCCACAC
CTTACTGATATGTGCACACACACACACACCTTTTCCCACCTTTACTCACA
CCTCCACCTTT
GGGGAGGGGGAATATTTAAAAAACAACCGAGNAAAAAAGGAGGGGGGGGG
GGGAAGGGGGGGAATTTCCAAAGGGGGGGGGAAGGGGGGGGGCGGAGAGG
GGGTGGGGGGGGGGGGGGAGAGGGGAGNGGGGGAAAGGTTGGGCCCAAAA
AGAGGGGGGGGGGAGGGGGGGANGGGNGGGGGGGGGGAGGGGGGGGGAGG
GGAGAGGGANGAAAAGGGGGGGGGGGGGGGGGAGGGGGGGGGGGGGGAGA
AAGGGGGGGAGGGAGGGGGGGGGAAGGAGGGAAGAGGGGGGGGGGGGGGG
GGGGGGAGGGGGGGGAGGGAGAGAGGGGGGAGAAAAGGGGGGGTGGTGGG
GGGGGGGGGAGGGGGGGGGGGGAAGAGGGTTGGGGTGGGGGTCGGAGCGG
AAGCGAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGCCCGCAAAAA
ATTAATTNTAAAANTGGGGGTTTTGTCTGGGGGGTGTGGATGTACGGGGA
AGAGATAAGAGGGGGGGGTGGAGGGGGGGGGGGGGGGGAGGGGGGCGAAG
GGGGGGGGGGGAGGGGGGGGAGAGGTGGGGAAGGGGGGGGGAGGAGGGGG
GGGGGGGGGAGAGGGGGGGGAGAGGGGGGGGGGGGGTGGGGAATGGGAAA
AGGGGGGGGGGGGAGGGGGGGGGGGGGGGGGGGGAAGGTAGAGGAGGGAG
AGGGGGGTAGGGGGGGGAAATGGAGGGGGGGGGGGGAGAGAAGGGGGGGG
AGGGGGGGGGGGGGGGGGGGGAAGGTGGGGGGGGGGGGGCGGGGGGGGGG
GGGGGGGGAGAGAAGGGAGGGGGGGGGGGGGGGGGGGGGAGAGGGGAGGG
AGAGGGGGAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no187_a19.b1 MSMg01no187_a19.b1 CHROMAT_FILE:
MSMg01no187_a19.b1 PHD_FILE: MSMg01no187_a19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:02:14 2005
         (597 letters)



>mm_chr7_6633193_6634189
          Length = 997

 Score = 1104 bits (571), Expect = 0.0
 Identities = 589/595 (98%), Gaps = 1/595 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcttctt-aacgcatacattagctgagtgagacattgtgtgtttatagtcccagc 62
           |||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 ggaattcttcttaaatgcatacattagctgagtgagacattgtgtgtttatagtcccagc 262

                                                                       
Query: 63  acttagggagctgaggcaggaggattccaagaacaaattcaggctaggctacatagcaag 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 acttagggagctgaggcaggaggattccaagaacaaattcaggctaggctacatagcaag 322

                                                                       
Query: 123 aatgtgtttcattcttaccccagctgcatatattatcttaatgaaaaccatctacatgta 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 aatgtgtttcattcttaccccagctgcatatattatcttaatgaaaaccatctacatgta 382

                                                                       
Query: 183 ttcttaaggtgaagtgttgggtaatgagcaagtgattcagaaaagcactgttatttttat 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 ttcttaaggtgaagtgttgggtaatgagcaagtgattcagaaaagcactgttatttttat 442

                                                                       
Query: 243 aagtcaacatagggttgtgaattagcaatgatatttttaaaagattaagatcaggtagga 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 aagtcaacatagggttgtgaattagcaatgatatttttaaaagattaagatcaggtagga 502

                                                                       
Query: 303 accaatctgctaaaaagcaatgctattaacatcttttaaacaattaagacactgagctat 362
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 503 accaatctgctaaaaagcaatgctattaacttcttttaaacaattaagacactgagctat 562

                                                                       
Query: 363 acccaccaaaaggaaagttagggcctggggtgatggctcaatgggtaagagcacttgatc 422
           |  ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 agacacaaaaaggaaagttagggcctggggtgatggctcaatgggtaagagcacttgatc 622

                                                                       
Query: 423 tgcaagcatgagggactgagttcaaatccccagtacccactagaaaacacaggcatagct 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 tgcaagcatgagggactgagttcaaatccccagtacccactagaaaacacaggcatagct 682

                                                                       
Query: 483 acatgcctgtaacctcatcattagggggcagagactgaaggattctgagaacttactagc 542
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 acatgcctgtaacctcatcattagggggcagagactgaaggattctgagaacttactagc 742

                                                                  
Query: 543 tgggcaggatagccagaaaggttagcttctaactcagcaagaggctctctagaaa 597
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 tgggcaggatagccagaaaggttagcttctaactcagcaagaggctctctagaaa 797


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 597
Length of database: 997
Length adjustment: 10
Effective length of query: 587
Effective length of database: 987
Effective search space:   579369
Effective search space used:   579369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)