BAC Information

Click to search

BAC

Clone NameMSMg01-187A24
Chromosome7 (Build37)
Map Location 7,078,146 - 7,078,792
singlet/doubletsinglet
Overlap genenone
Upstream geneZfp787, Zfp444, Galp, Zfp371, EG627821, Zfp667, Zfp583, LOC100042467, LOC100042459, Zfp78, Zfp28, LOC100042450, Olfr1344, GA_x5J8B7W3DQU-679632-679375, Olfr1336, Olfr1346, Olfr5, Olfr1347, Olfr1348, Olfr1349, LOC665328, Olfr1350, Zim2, Zim1, Peg3, Usp29, LOC627961, Aurkc, LOC628030, LOC100041822, 5730403M16Rik
Downstream gene2810409K11Rik, Vmn2r-ps35, Zfp418, BC023179, 6430701C03Rik, Clcn4-2, V2r15, LOC100041866, LOC100042577, Vmn2r31, Vmn2r-ps36, V2r5, LOC100041883, EG628117, Vmn2r33, LOC665470, EG665474, EG628368, LOC100042636, LOC665485, EG625353, Vmn2r-ps40, Vmn2r36, LOC638170, LOC100042662, LOC100041942, LOC100042673
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-187A24.T7 (MSMg01no187_a24.b1)MSMg01-187A24.TJ (MSMg01no187_a24.g1)
ACCAG378547AG378548
length744756
length of high quality
(start - end)		315 (46 - 360)677 (77 - 753)
definitionCHROMAT_FILE: MSMg01no187_a24.b1 PHD_FILE: MSMg01no187_a24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:02:15 2005CHROMAT_FILE: MSMg01no187_a24.g1 PHD_FILE: MSMg01no187_a24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:02:15 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTAGGGCCTAGTGAAGAAATCTGTCTCAGTGGGATTTCCTAACTT
TTCTCATGGTGAACCCTTATTTGGTTAAGTCTGTCCTTTCTGTCCTAGTA
AACATCTTGTAGACTAGCCCTGAGCTGTTGGCTCCGTCTTTTACAATGCT
AATTAGTTACTGAATAGGTAACTTCCTTGCTGAATTCCTACTGAATTCCA
AGTAGTCAGCTTACACGGTCTTTCTAGGGCGTTGGAACACTGGCGAAGAC
TAAACTGTATCAGGATACAATTTTAAAAGGCACTATAGTAAGATAACACT
AAAGGAGAGTTTGTGTTCCTCCCCACCCCCCTTGAGTGACAGGCAGTGAA
CAGAGAGGAGCGCCCCCCGACTGAAAACAATAAACAAGGTCATTTGACTT
GTTAGGGTGTTAGGCTGTGAAGTTCTTGCCTTTTCACCGCATGTTCTTCA
ACCTCTCTCCCCCCTTTGAATTACCTTACTTATGCCCCTTTTATTTGTTT
TCCTCAATTGTCCCTCTTTTTTCTTTTATTACCGCCTCTTTTTTTTGTCA
GTTCCTCCCCCGATCTTTTTTTCTTTTTCGCCATTATTTTCTTTTTTCAC
CCCCTTTTTTTTTTTTTCTCCCCTCCCCCACCTTTACCCTACCCTTCACC
TTTTTTTTTTTTCTCACCCCCCCTTTTTTTTATTTTCCCTCCCT

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCTAACCATGAAGGTAAGACCACA
TTCATACCTACTATAAGGAGTATGATTACGCCTATAAACAGAGGCACGTG
TCATAGGATCTTGTAGTGTCTGCACAGACTTCTGCCCATTCATACTTTCC
CAGACTGAAGGGCAGGGCATCCTGGAGAGGCCTTTGGTGTGATGTGAGAT
AATGGTGGCCTTGTATCTTCGCCTGGTATACAGTGGACTTTACCTGCAAT
TGAGTGCTTCCCAGACACAGCAAGTGGATCATGTGATAGCAAATGAAAAT
GAGACATTGGTGAATAAAGTCTAGTCACAAGCAGGCCTCATGATGTTTAA
AAGAAAAAATGAAATAGAAGAGACATAAAGCATATACTAAGGTATGTCAG
TACATCATAAAGTCAGCAGAGAGACTGAGATCTGAAGAGGAATTATTTGG
CTTCATTGACAAAGTACATGTGCAAAATATTATACTTTAATATTTTAAAT
ATATGGTCAAAGGTCTGCATAAGCTATATGGTATGTGTATCAGTCAGTGG
TATGGAAAGGCATGTGCATAGGCAGACACACAGACATCCAATAAAAGCAG
TTGGAAGACTTCAGATAGGCACTGAAACTCCACTTTCTCCTCTGTAAGAA
CAAAACATACTCGTAGTTGCTGAGCCATCTCTCAAGCTGTGAAACTCCTT
TTGAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no187_a24.g1 MSMg01no187_a24.g1 CHROMAT_FILE:
MSMg01no187_a24.g1 PHD_FILE: MSMg01no187_a24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:02:15 2005
         (677 letters)



>mm_chr7_7078146_7079222
          Length = 1077

 Score = 1243 bits (643), Expect = 0.0
 Identities = 646/647 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctaaccatgaaggtaagaccacattcatacctactataaggagtatgattacgcctata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 647 tctaaccatgaaggtaagaccacattcatacctactataaggagtatgattacgcctata 588

                                                                       
Query: 61  aacagaggcacgtgtcataggatcttgtagtgtctgcacagacttctgcccattcatact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 aacagaggcacgtgtcataggatcttgtagtgtctgcacagacttctgcccattcatact 528

                                                                       
Query: 121 ttcccagactgaagggcagggcatcctggagaggcctttggtgtgatgtgagataatggt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 ttcccagactgaagggcagggcatcctggagaggcctttggtgtgatgtgagataatggt 468

                                                                       
Query: 181 ggccttgtatcttcgcctggtatacagtggactttacctgcaattgagtgcttcccagac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 ggccttgtatcttcgcctggtatacagtggactttacctgcaattgagtgcttcccagac 408

                                                                       
Query: 241 acagcaagtggatcatgtgatagcaaatgaaaatgagacattggtgaataaagtctagtc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 acagcaagtggatcatgtgatagcaaatgaaaatgagacattggtgaataaagtctagtc 348

                                                                       
Query: 301 acaagcaggcctcatgatgtttaaaagaaaaaatgaaatagaagagacataaagcatata 360
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 347 acaagcaggcctcatgatgtttaaaagaaaaaatgaaatagaagagaaataaagcatata 288

                                                                       
Query: 361 ctaaggtatgtcagtacatcataaagtcagcagagagactgagatctgaagaggaattat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 ctaaggtatgtcagtacatcataaagtcagcagagagactgagatctgaagaggaattat 228

                                                                       
Query: 421 ttggcttcattgacaaagtacatgtgcaaaatattatactttaatattttaaatatatgg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 227 ttggcttcattgacaaagtacatgtgcaaaatattatactttaatattttaaatatatgg 168

                                                                       
Query: 481 tcaaaggtctgcataagctatatggtatgtgtatcagtcagtggtatggaaaggcatgtg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 167 tcaaaggtctgcataagctatatggtatgtgtatcagtcagtggtatggaaaggcatgtg 108

                                                                       
Query: 541 cataggcagacacacagacatccaataaaagcagttggaagacttcagataggcactgaa 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107 cataggcagacacacagacatccaataaaagcagttggaagacttcagataggcactgaa 48

                                                          
Query: 601 actccactttctcctctgtaagaacaaaacatactcgtagttgctga 647
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47  actccactttctcctctgtaagaacaaaacatactcgtagttgctga 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 677
Length of database: 1077
Length adjustment: 10
Effective length of query: 667
Effective length of database: 1067
Effective search space:   711689
Effective search space used:   711689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |