BAC Information

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BAC

Clone NameMSMg01-187D16
Chromosome7 (Build37)
Map Location 106,975,996 - 106,976,334
singlet/doubletsinglet
Overlap geneNeu3
Upstream geneWnt11, LOC666978, Uvrag, EG666529, Dgat2, Mogat2, Mtap6, Serpinh1, Gdpd5, 2810406K13Rik, Rps3, Rnu15-b, EG449630, Arrb1, EG245190, Slco2b1, Olfr520, Olfr521
Downstream geneSpcs2, Xrra1, EG330602, Chrdl2, Pold3, 2610209A20Rik, Kcne3, LOC631577, Pgm2l1, Gpx2-ps1, P4ha3, Ppme1, AU020772, Ucp3, Ucp2, Dnajb13, LOC667112, Chchd8, Mrpl48, LOC100041155, Rab6, LOC100041167, Plekhb1, B930006L02Rik, LOC100041204
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-187D16.T7 (MSMg01no187_d16.b1)MSMg01-187D16.TJ (MSMg01no187_d16.g1)
ACCAG378654AG378655
length728735
length of high quality
(start - end)
318 (45 - 362)340 (393 - 732)
definitionCHROMAT_FILE: MSMg01no187_d16.b1 PHD_FILE: MSMg01no187_d16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:02:28 2005CHROMAT_FILE: MSMg01no187_d16.g1 PHD_FILE: MSMg01no187_d16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:02:29 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCCTCCTGTGGTTTTAAATGCAGGCTGAAGTGGTTGCCTCTATAACA
ATTGTGCCACTATTGCACTAGTAGGTACATCTAGCCTGGTGGGCTGAAAT
TATCACATACAGAGGACCATAAGGTAAGACCATTGATAACTTTCTGTTTT
AGTAGCCTGCATAGAACCTCACAGTACTTGAAAGCTAGGCAGTAGTGAGA
ATGTATCCAGCTAGGTCTCAGCTTGATTTCTCTATGTCCTGCCACCAAAG
TCTATGATGTCTTCAGCAATCTATCTAGTTTAGTGGGCAACCCAAGGGCA
ATAGCAAGATTTTTTCTTCTCCCGCCCCCCCAGGCAATTCCCTGACCAAC
AACTCATAGGGAGGCATCCCAGATATGGAACTGCATTTTGTTTGTCTGTT
TAAACTTATTATCTACCCATAACACCATTATAACTACTTTTTAAATTATG
TGGGTTTTTTTTTTTTGTTTGTTTGTTTTTTTCAAGACAGGGTTTCCCTG
TATAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACTTGTTTTGTTTTGT
TTTTGAAATTATATGTTTGAATTAACTTAGAAAGCAGTTGGTTTCCATAT
GAATTTCATATACAAAATGCATATAGCTATTTTTCATATATTCTTGGTTT
GGATTAATTCTTCTTACAACTGCCATCT
CTAATTTNNCCCTACTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCCGGGGAC
TGTGGGGACCTGCATCAGGAAGGAAGACTGATTCACCCAGAATCAGCTAG
GACCATTCTACTTTTGCTTTCTTCCATCTAAAGCCAAACTTCAGCTGTAG
TTTAGAACTGTGGGAACAAACCGAGACTGGGAAGTCTTCTTACTATAGAG
GAGTTGTGGGCGACCAAAAAGGTTCCAAGGTGGAATGTTTTTGATACTAG
ATTTGCAACTGAGTGGTCTCCCCTAAGTTTTCCTCTTCAAACAAGGCTGA
CTTCAGAAGTCGTGCTAAACTGTTTTCTCCCCAAGAAAGACAGTAGAGAG
GACTTGGTTGGAAGGTGAGAGAGTATGGAACAGTAATTAATAATCAGAAT
TATCTGCTAAAGCAAACAACTCCAAAGCAGATCTGTACTAGATTCTTCTC
AGCCCCTAGTTCTGAGCACATAGTTTGGGTGAATCCTTTAGGTGTGACCA
GGCCACTGTGTTACCACTGTCATCATTATTATTAGAATAATCATAGTGAA
AATTAATGACAATTTAATTGTTAAGGTGATGGCAGAACCAAAACTGAATT
GTAAAAAGGTCAGCATTCACAATAATTAAAGACATCAATTTGTATAGTGC
CTTAACGTTTATAAAGCATTTTTGAATGGTCCTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no187_d16.g1 MSMg01no187_d16.g1 CHROMAT_FILE:
MSMg01no187_d16.g1 PHD_FILE: MSMg01no187_d16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:02:29 2005
         (340 letters)



>mm_chr7_106975795_106976534
          Length = 740

 Score =  640 bits (331), Expect = 0.0
 Identities = 337/339 (99%)
 Strand = Plus / Minus

                                                                       
Query: 2   tagagaggacttggttggaaggtgagagagtatggaacagtaattaataatcagaattat 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 tagagaggacttggttggaaggtgagagagtatggaacagtaattaataatcagaattat 481

                                                                       
Query: 62  ctgctaaagcaaacaactccaaagcagatctgtactagattcttctcagcccctagttct 121
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 480 ctgctaaagcaaacaactccaaagcagacctgtactagattcttctcagcccctagttct 421

                                                                       
Query: 122 gagcacatagtttgggtgaatcctttaggtgtgaccaggccactgtgttaccactgtcat 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 gagcacatagtttgggtgaatcctttaggtgtgaccaggccactgtgttaccactgtcat 361

                                                                       
Query: 182 cattattattagaataatcatagtgaaaattaatgacaatttaattgttaaggtgatggc 241
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 360 cattattattagaataatcatagtgaaaattaatgacaatttaattgttgaggtgatggc 301

                                                                       
Query: 242 agaaccaaaactgaattgtaaaaaggtcagcattcacaataattaaagacatcaatttgt 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 agaaccaaaactgaattgtaaaaaggtcagcattcacaataattaaagacatcaatttgt 241

                                                  
Query: 302 atagtgccttaacgtttataaagcatttttgaatggtcc 340
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 240 atagtgccttaacgtttataaagcatttttgaatggtcc 202


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 340
Length of database: 740
Length adjustment: 9
Effective length of query: 331
Effective length of database: 731
Effective search space:   241961
Effective search space used:   241961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)