BAC Information

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BAC

Clone NameMSMg01-187I12
Chromosome7 (Build37)
Map Location 147,942,892 - 147,943,196
singlet/doubletsinglet
Overlap genenone
Upstream geneEG664869, Gpr123, LOC244229, Kndc1, Utf1, LOC100039095, 6430531B16Rik, Adam8, Tubgcp2, Zfp511, Msx3, Drd1ip, Prap1, 1810014F10Rik, Echs1, Paox, Mtg1, Sprn, Olfr522, Olfr523, Olfr524, E430002D04Rik, 5830411N06Rik, EG622335, Olfr525, Olfr527, GA_x5J8B7W72BC-152913-152037, Olfr60, GA_x5J8B7W72BC-125691-125311, Olfr530, LOC622973, Olfr531, Olfr532, Olfr533, Olfr534-ps1, Olfr535, Olfr536, Olfr537-ps1, Olfr1523-ps1, Olfr538, Olfr1553-ps1, Olfr46, Olfr61, Olfr53, Olfr539, GA_x5J8B7W3EKE-4574231-4574913, Olfr45, Olfr541, GA_x5J8B7W3EKE-4522784-4521912
Downstream geneCyp2e1, Syce1, LOC100043529, BC066028, 1190003J15Rik, Scgb1c1, Odf3, Bet1l, Ric8, Sirt3, Psmd13, LOC100043546, Cox8b, Nlrp6, Athl1, Ifitm5, Ifitm2, Ifitm1, LOC665143, Ifitm3, Ifitm6, B4galnt4, Pkp3, Sigirr, Trp53i5, Ptdss2, Rnh1, LOC546015, Hras1, Lrrc56, 1600016N20Rik, Rassf7, AA673488, Irf7, Mucdhl, Sct, Drd4, Deaf1, Tmem80, Eps8l2, B230206H07Rik, Taldo1, LOC100043585, Pddc1, Cend1, Slc25a22, Lrdd, Rplp2, Pnpla2, Efcab4a, Cd151, Polr2l, Tspan4, Chid1, Ap2a2, Muc6, LOC100039649, Muc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-187I12.T7 (MSMg01no187_i12.b1)MSMg01-187I12.TJ (MSMg01no187_i12.g1)
ACCAG378848AG378849
length724748
length of high quality
(start - end)		308 (46 - 353)515 (77 - 591)
definitionCHROMAT_FILE: MSMg01no187_i12.b1 PHD_FILE: MSMg01no187_i12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:02:52 2005CHROMAT_FILE: MSMg01no187_i12.g1 PHD_FILE: MSMg01no187_i12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:02:52 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAGTAGGAATTCAGTGAGAAGGTTATGAGAACGCCAAAGGTATGTG
GATTGTCCTACAGCAGGCCAGTTTTTATGAGGAAAAAGCCAAGCTCTGCA
AAGGTGCCAAAGGGACCTCCTCCTCCTGGATCACAGGCTTCTCCATTTGG
GACGGGTAGCATGTCAGGACTGGTACTCTGACTTTCTGTTCCTTTAAACT
CAAAGAAGAATAGTACTCAGAAGGCATAAATCCTTGGGCCACAGTGGTTT
AAAACATAGTTGGCAAATATGCCATTTTGGATACCTAAAAAGACTGCTAG
TAATTGGTGAGTTGACCCCCCCCCCCTTCCTGTAAATTTTCTCTTGTTTT
TGTATGATAAAACGCCAAGACAAAGATAAACTCTTCTTTCCAATTAAAAG
GGGCCCAAACTAGAAATTTGTTGGCTAAGTAGCTGTTATTTATCTTATTT
AGCACTACTTTTCATTAAATCAATGGCCTTGACTGAAGCCCAAATTTCTC
TTCTAAGTAAAACCAAAACATAAAATACACACTATCAGTACAAACAAGCT
AGCTTGGCCTGGGGACAGAGTTCCCTACATCAAAGGAGTTGTCATCTGCC
AGATGGAGATGGCCTCTGAGTCTGAGCTTCTGTTTAACATCCAGGGAGCA
AATAATGATTTCCTACCAACAGCG

CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACTGTGACAGAAAAAGGTGGGTTA
AATCCTAAGTTCCTTTATGTGTCTCCTTTGGCTAATAGTGGAGCTCCAAA
ACAAAAGGCTCACTATAAAAGTGACATTAGTCCTAGTGTTTGCATGTCAC
CATTAAAGGACAACAACTTATCTTCTCAATGAGTCCTGAGTTTGATGAAG
GGTGCTGGGTCAGAGGTCAGAAAACAGAATATGATAGAAAGATTTGTTAT
CTTCTTCCATTGTATAAATAGCAGAATTTCTAGCATCTAATCACCATCAG
AGAGTTTAGTCGTGCCTGTTGTTTTTCTTCTTATGTTCATAACAGGATCT
ATCCATTCATCACCCACAGTGCCCACACTAATTGTGAAAGGCAACCAACA
GATTTAGATGAATCTAAGATAAATTTATATGAGTAGATAGGACTTGGATG
CTGTCTTGATGGTCTGTGGTATCCACACAGAAAGGTGAGAAATGCCACAG
AAGAGATTTTTCTTACCCTGTTGTCCAGAGTCCACTGTTCACGAACATAT
AATGACCTGCAGCTTCCATGGAGTTAATAACACCATCATAGCACTGATGG
TGTCAGCCTTGCCCTGTCTCCTAAAGAACAGGATACCATGACTTGTAGTC
ACTTACGGAAATCAATACCGCTGCCCAATATTCCGTACGAATATAACG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no187_i12.b1 MSMg01no187_i12.b1 CHROMAT_FILE:
MSMg01no187_i12.b1 PHD_FILE: MSMg01no187_i12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:02:52 2005
         (308 letters)



>mm_chr7_147942689_147943396
          Length = 708

 Score =  567 bits (293), Expect = e-166
 Identities = 302/305 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcagtaggaattcagtgagaaggttatgagaacgccaaaggtatgtggattgtcc 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 ggaattcagtaggaattcagtgagaaggttatgagaacgccaaaggtatgtggattgtcc 449

                                                                       
Query: 64  tacagcaggccagtttttatgaggaaaaagccaagctctgcaaaggtgccaaagggacct 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 tacagcaggccagtttttatgaggaaaaagccaagctctgcaaaggtgccaaagggacct 389

                                                                       
Query: 124 cctcctcctggatcacaggcttctccatttgggacgggtagcatgtcaggactggtactc 183
           ||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||
Sbjct: 388 cctcctcctggatcacaggcttctccatttgggacgggtcgcatgtcaggcctggtactc 329

                                                                       
Query: 184 tgactttctgttcctttaaactcaaagaagaatagtactcagaaggcataaatccttggg 243
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 328 tgactttctgttcctttaaactcaaagaagaatagtactcagaaggcataaatccttgcg 269

                                                                       
Query: 244 ccacagtggtttaaaacatagttggcaaatatgccattttggatacctaaaaagactgct 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 ccacagtggtttaaaacatagttggcaaatatgccattttggatacctaaaaagactgct 209

                
Query: 304 agtaa 308
           |||||
Sbjct: 208 agtaa 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 308
Length of database: 708
Length adjustment: 9
Effective length of query: 299
Effective length of database: 699
Effective search space:   209001
Effective search space used:   209001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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