BAC Information

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BAC

Clone NameMSMg01-188F02
Chromosome7 (Build37)
Map Location 151,016,852 - 151,017,168
singlet/doubletsinglet
Overlap geneDhcr7
Upstream geneEG624121, Th, Ascl2, Tspan32, R74862, Cd81, Tssc4, Trpm5, Kcnq1, Cdkn1c, Slc22a18, Phlda2, Nap1l4, Cars, Tnfrsf26, Tnfrsf22, Tnfrsf23, Osbpl5, Mrgprg, Mrgpre, Nadsyn1
Downstream geneGm498, Shank2, Cttn, Ppfia1, Fadd, Tmem16a, LOC669079, LOC677315
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-188F02.T7 (MSMg01no188_f02.b1)MSMg01-188F02.TJ (MSMg01no188_f02.g1)
ACCAG379375AG379376
length7671,362
length of high quality
(start - end)
322 (46 - 367)---
definitionCHROMAT_FILE: MSMg01no188_f02.b1 PHD_FILE: MSMg01no188_f02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:03:56 2005CHROMAT_FILE: MSMg01no188_f02.g1 PHD_FILE: MSMg01no188_f02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:03:56 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAACAAATGAACATCTTTAATTTTTGAGCTACTTTGATAGAATCTT
TTTGAAATTGCTCTTTAAAACAAACAAAAACAAAGTAGTTGATGGGTATA
GAGAGGGCCTGCATGCTGCATGCCAGAAAGAGGTGCACCTAGTAGTGTAT
GGTAAAGCCCTGCTACCAAAGAATTTGGTCAAAACAAAACAAAACAAAAA
CAACAACAAAAACCATTTGGATATAAAGGAGGGACAGTAGATTATATAAA
TGAGAATTTGTGGAACAATCTGGAAGGGTAATGAGGCCTGGGATGGACTT
GAGGGAGGAGAAAACTCTTTTGCCTCCACACCCCACGTATATTTTGGAAC
TTCTGAAAAGCAGAGATCTTATAACTTCGATTAGAACCAGAGATTATTCC
AAATCTCTGGTCATTTCCTTCCTCATTGGACTCATTTCTGGGGGCTTCAG
GAATTGCTGTTCCTCCACAGGGACCTCAAGCTTTCAAGATAGTCAGACCA
CAGTTCTGTGTTCTGCTGGAGAGGATCCTCTGTATCCCCTGTGCAGAGCT
TACCAGCCTTGGGTCACTCCAGAAGCCAGCCTCCCTGACCTGTGTAAATT
GTTGGACCTTATGTCGCTCCACCTGCCATTTAAATACATAGTCTCTCTTT
GCTACGAAAAACCTTGTAAACCCCCAACATGCCCACCCTTTGTTATGCCC
TCCTATATACCTTCCCG
GAGAGGGGGGAGGGGGGAGGGGGGTGAAGGGGAAAATAGGGTATGTGATN
TTTGGTNTTTTCTATGGGAGGAGGAGTGGGAGGGGGAAGAAAAAACCAAC
GAGGGAGGTTTCATTCTAAAAGGAGGNGGGGAGGGGGGGGAGGTTGTCCG
TACACAGGAGGGGGGTGGGGGGGGGAGAGAGGAGGTGGTGGGGGGGGGGG
GGANNNAGNNTNGTTTTTTTTTTGTCTGNGAAAAAAAAGAGGGGAGGGGG
GAGGAAGAGGTATATATGGTAGTAGTGAGGGTGTTATTTGGGTTGTATAG
TGAGGGAGTTATAAAGGGGAGGGGAGGGAGGGGGGAGAGNATGTGAAGAG
GAGCGAGGAGAAGGATAGAGTTTAAGTTAGGAATGAGAAAGGCAGGGGGG
TAGGGGGTGTGGGTTGGGTGGGGCATATGATAAGTGGAGAGGGGGGTGAG
GGGTGGGGAGGAGGTGGGAGATAGAGGGAGGTGTAAGGGTAGGATAGAAT
AAGANATGAGGGAAGAAGNAAGGGAGTGTGTTTGTTGAGGAATAAGGGTA
GAGTGGGGGGGTGAGGAGAGAGAGAGTGGAGGAGGAGGGGAATGTATTTG
TTGATGGGTAGCGGGGACGCATGAGCAGAGAGGGGAGTGAGAAAGAGGGA
TGGGATAATAGTTAGAGGGGAGGGGGGAGGTGTGGGGGGTGGTGGGCCCC
CCACAAGGAGGAGAAGATACATAATAAGATGTGTGGTGCGTGAGGGTGGT
GGTGGGGGTGAGTGATGCGTAAGGAGAGAGGATAGAGTGTGGTAGGAGGT
GATGTGAAGCATTTGGGAGGATGTGTGTATTGATGAGGATAGAGGTAAGG
AGGAGAAAAGAGGGAGGAGGTGTGTGGAGATAGGAGAAGAGGATGAGGTG
AGAGTGTAGACGAAGAGGGTGGAGTGAGGATGGGGATGAGAAGATGCAGG
AGAGGAGGGCGGTGTGGGTGTGAGAGTGGAGAGGAGAGCGTGAGGGTGGG
GTTGGGAGGTGTGTGTATGAAGCAGCCGCGGTGTGTACGGCCGTGTGTGA
TGGTGTGATGAGAGANATGGTAATTGAGTAGTGAGCGTGAGGCGGCGCGT
GAGGTGATGTGTGCGAGGGGACGTGCGTGGGATGTGGTGGAGTGAGTATA
GGGTGGCGGTNTCGAGGAGTGAGTCGAGGAGAGAGGCGAGAGTGGAGAGG
AGTAATTAGTGTAGTGGACGATATATGAGTATATGTGGTTATATGTAGAG
TGACGATGGTGGATGAGTGGCGCGCGGAGTGTGGGAGCGAGAGAGTGTAG
GGTGTGTGTGGAACATAGAGAGATGGAGGGAGGAGGGAGAATGAGTAGAT
GTGAGACGAGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no188_f02.b1 MSMg01no188_f02.b1 CHROMAT_FILE:
MSMg01no188_f02.b1 PHD_FILE: MSMg01no188_f02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:03:56 2005
         (322 letters)



>mm_chr7_151016649_151017370
          Length = 722

 Score =  590 bits (305), Expect = e-173
 Identities = 314/317 (99%), Gaps = 1/317 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaa-caaatgaacatctttaatttttgagctactttgatagaatctttttgaaat 63
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gaattcaaacaaatgaacatctttaatttttgagctactttgatagaatctttttgaaat 263

                                                                       
Query: 64  tgctctttaaaacaaacaaaaacaaagtagttgatgggtatagagagggcctgcatgctg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tgctctttaaaacaaacaaaaacaaagtagttgatgggtatagagagggcctgcatgctg 323

                                                                       
Query: 124 catgccagaaagaggtgcacctagtagtgtatggtaaagccctgctaccaaagaatttgg 183
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 catgccagaaagaggtacacctagtagtgtatggtaaagccctgctaccaaagaatttgg 383

                                                                       
Query: 184 tcaaaacaaaacaaaacaaaaacaacaacaaaaaccatttggatataaaggagggacagt 243
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 taaaaacaaaacaaaacaaaaacaacaacaaaaaccatttggatataaaggagggacagt 443

                                                                       
Query: 244 agattatataaatgagaatttgtggaacaatctggaagggtaatgaggcctgggatggac 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 agattatataaatgagaatttgtggaacaatctggaagggtaatgaggcctgggatggac 503

                            
Query: 304 ttgagggaggagaaaac 320
           |||||||||||||||||
Sbjct: 504 ttgagggaggagaaaac 520


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 322
Length of database: 722
Length adjustment: 9
Effective length of query: 313
Effective length of database: 713
Effective search space:   223169
Effective search space used:   223169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)