BAC Information

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BAC

Clone NameMSMg01-190C05
Chromosome7 (Build37)
Map Location 64,429,033 - 64,429,312
singlet/doubletsinglet
Overlap geneGabrg3
Upstream geneHerc2, p, LOC100040839
Downstream geneGabra5, Gabrb3, EG668807, LOC434189
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-190C05.T7 (MSMg01no190_c05.b1)MSMg01-190C05.TJ (MSMg01no190_c05.g1)
ACCAG380583AG380584
length742683
length of high quality
(start - end)
316 (59 - 374)280 (59 - 338)
definitionCHROMAT_FILE: MSMg01no190_c05.b1 PHD_FILE: MSMg01no190_c05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:06:17 2005CHROMAT_FILE: MSMg01no190_c05.g1 PHD_FILE: MSMg01no190_c05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:06:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTTCCCCCCTATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXCGCGGAATTCTTTGTTCAGTTCTGAGCCCCATTTTTTAATGG
GGTTATTTGATTTTCTGAAGTCCACCTTTTTGAGTTCTTTATATATGTTG
GATATTAGTCCCCTATCGGATTTAGGATAGGTAAAGATCCTTTCCCAAAA
TGTTGGTGGTCTTTTTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAAC
TTTGGAGTTTCATTAGGTCCCATTTGTCAATTCTCGATCTTACAGCACAA
GCCATTGCTGTTCTGTTCAGGAATTTTTCCCCTGTGCCCATATCTTCAAG
GCTTTTCCCCACTTTCTCCTCTATATAGTTTCACCCCGCCTCCGGTTTTA
TGTGAAGTTCCTTGATCCACTTAGATTTGACCTTAGTACAAGGAAATAAG
TATGGATCGATTCACATTCTTCTACATGATAACAACCAGTTGTGCCAGCA
GCAATTGTTGAAAATGCTGCCTTTCTTCCACTGGATGGTTTTAGCTCCCT
TGTCGAAAATCAAGTGACCATAGGTGTGTGGGTTCATCTCTGGGTCTTCA
ATTCTGTTCCATTTGTCTACTTGTCTGTCACTATACCAGTACCATGCAGT
TTTTATCACAATTGCTCTGTATTAAAGCTTTAGGTCAGGTATGGTGATTC
CGCCATAGGTTCTTTTATCCTTGAGAAGAGTTTTTGCTATCC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXCTGCCACATTTTCAGATCTCCTTGAGGAGCAAGCCTGTGAAT
TTGTGTACCAGGGTCTTGGCTTCTGGAAGTCACAATGAGGAATCAACTAA
ACATTCATACTCCAGAGTGTCATTCAGCTCAGATGTGAGTGAATCTTGGT
ATGGATATTGGATTTGTTACTTGCTGCCGAGCCAGGCTGGATTTCTCCAT
AACAAGACATTGGGTTCTGGCTTGCAGTACTGACAGAGGTGTCTGTGACA
TGGGAGGATACATGTGCCTGCCAAGATAGCTTTGTGTATGTTTGTCCCCG
CCCCCACCTTTCCCAGACTGGGGCCCTTGCATTGTCCTCAGAAGCCCAAG
CTACTATTGATGTTGGCTGTATGAAAGGATCAGTATCTTGTTCCTATGTT
CTCTGATACTCCATGCTTAGGCATTGGTCAAGTTTATGTGGTTTTTTTTT
CCTATAAAAAGGATGTGAGAATATTGCTGATGAGTGCTGAAAACCATGGA
AGCCACTTAGAGAGAACATCATGATAGGGACAAGACTGAACAGCATGGGG
GGTGGGTGCGGAATGAGAAATGCTGCAGTGGGTAACAAACACAGCCCTCT
TTCTTAGTCAGCTAGCCCTGCTTGCTTTAAGAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no190_c05.g1 MSMg01no190_c05.g1 CHROMAT_FILE:
MSMg01no190_c05.g1 PHD_FILE: MSMg01no190_c05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:06:17 2005
         (280 letters)



>mm_chr7_64428833_64429512
          Length = 680

 Score =  511 bits (264), Expect = e-149
 Identities = 276/280 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctgccacattttcagatctccttgaggagcaagcctgtgaatttgtgtaccagggtcttg 60
           ||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct: 480 ctgccacattttcagatctccttgaggagtaagcctgtgaatttgtgtaccggggtcttg 421

                                                                       
Query: 61  gcttctggaagtcacaatgaggaatcaactaaacattcatactccagagtgtcattcagc 120
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 gcttctggaggtcacaatgaggaatcaactaaacattcatactccagagtgtcattcagc 361

                                                                       
Query: 121 tcagatgtgagtgaatcttggtatggatattggatttgttacttgctgccgagccaggct 180
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 tcagatgtgagtgaatcgtggtatggatattggatttgttacttgctgccgagccaggct 301

                                                                       
Query: 181 ggatttctccataacaagacattgggttctggcttgcagtactgacagaggtgtctgtga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 ggatttctccataacaagacattgggttctggcttgcagtactgacagaggtgtctgtga 241

                                                   
Query: 241 catgggaggatacatgtgcctgccaagatagctttgtgta 280
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 catgggaggatacatgtgcctgccaagatagctttgtgta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 280
Length of database: 680
Length adjustment: 9
Effective length of query: 271
Effective length of database: 671
Effective search space:   181841
Effective search space used:   181841
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)