BAC Information

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BAC

Clone NameMSMg01-190D11
Chromosome7 (Build37)
Map Location 38,235,603 - 38,235,890
singlet/doubletsinglet
Overlap genenone
Upstream geneTshz3, LOC100043874
Downstream geneZfp536, LOC100043453, EG627844, C80913, Ccne1, 1600014C10Rik, Plekhf1, Pop4, LOC668519, LOC100043464, 1700010N08Rik, EG627975, EG625594
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-190D11.T7 (MSMg01no190_d11.b1)MSMg01-190D11.TJ (MSMg01no190_d11.g1)
ACCAG380636AG380637
length677730
length of high quality
(start - end)
324 (9 - 332)290 (75 - 364)
definitionCHROMAT_FILE: MSMg01no190_d11.b1 PHD_FILE: MSMg01no190_d11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:06:23 2005CHROMAT_FILE: MSMg01no190_d11.g1 PHD_FILE: MSMg01no190_d11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:06:24 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACTCCTATAGGGAGAGGATCCGCGGAATTCTGAGTTCGAGGCCAGCTTGG
TCTACAGAGTGAGTTCCAGGACAGCCTGGGCTACACAGAGAAACCCTGTC
TCAAAAAACAAACAAACAAACAAACAAAAGAAGTGTTACTAATATATGTA
TGAAAACAGATGACAACGTGAAAAGGAAAATTCTAAAACTAAAGAATGTA
ATGTCTGAAATTAAGCAATAGGCAATTTATTAATAACTTATTATTATTAA
TCATCTCTTAATTATTACTTTACTTGCATTTTAGGCATATTATGTCTCGC
TTGCATGTATGTATGTGTACAATGTGTGTGCTTCTTGTCTGTCCCCCCCC
GAAGAGAATGTGGGTATCAGATCCCCTCAAAGTAGAGTCACAGACAGTTG
TGGCTGCCACGTGAGTGTTGGGATTGAACCTGGTTCCTCTGTTAGAACAG
TTAGTGCTCTCAACCTAACTGAACCATCCCTTCAGGCCTCGAAACTAGAT
AAATTCTGAAACTGAGAAGGAAATGATAAATGAGACTGGCAATAGAGTCT
GTTTACTACCTCAATATCCCTTATTCTTGACCCTAGAGACCTGGAAAGAT
CTTCCCTGAGTACCCCTAGACCACCACAACCTCACACTGTCCTTTAAGTG
CCCATAGAGCTCTTTCCAGGCAGCAAG
ACGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTGGGGGCCGAGGTGATATACTGCAC
AGAGAAATCAGATCATTAGTTAGTTATAAACAAAGGACAGAGAGAGTAAA
TTAGAAGCGGGTATTTCGGCAGTTTCTTACGTATTTACGACAGCAAAATA
TGCAGCTGAGCTGTATTCCTTGAGATAGTATTTAAGCATCTCCAATCTAA
TGTTCGTTTCCAGACATGGCCGCGCCACGCATTTTGAAGCCTCGGCCATT
CTCGATCTTCTCCCGTAGACTTATCCGTGATATTTTCTTCCTTCCCTGTT
GCTCATTAGAAATTTGTTAATAACCCCTCCCGCCCTGATTAATAATAAAG
CTGATCACATGTAACCTAATTTTCATTCAGGAATGCCCCTGTCTGTGGAG
TCATATACAAAGTGATCATGGAACCGCCAGTGAACTCGTAAAGTACCATA
AGGACCATTGGCCTGCCAATCATGGAAGATGATTAAATGGATTAGCGAAT
TTACTGTACCATCGATTACAAAAGGAGGCATTTCCAAAGGCCACATGACT
CTTGAAGCTCATTACTGCCGAGAATCAAGCTTACTGAGGCGGAAATGAAT
AGAGATTCTCAGGCTATCGAAACAAAACGGATCAATCTTTTAAACCAGAA
AGGTTGCATATGACCTGTCAAAGGTGCCGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no190_d11.g1 MSMg01no190_d11.g1 CHROMAT_FILE:
MSMg01no190_d11.g1 PHD_FILE: MSMg01no190_d11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:06:24 2005
         (290 letters)



>mm_chr7_38235403_38236092
          Length = 690

 Score =  549 bits (284), Expect = e-161
 Identities = 287/288 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttgggggccgaggtgatatactgcacagagaaatcagatcattagttagttataaacaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 ttgggggccgaggtgatatactgcacagagaaatcagatcattagttagttataaacaaa 429

                                                                       
Query: 61  ggacagagagagtaaattagaagcgggtatttcggcagtttcttacgtatttacgacagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 ggacagagagagtaaattagaagcgggtatttcggcagtttcttacgtatttacgacagc 369

                                                                       
Query: 121 aaaatatgcagctgagctgtattccttgagatagtatttaagcatctccaatctaatgtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 aaaatatgcagctgagctgtattccttgagatagtatttaagcatctccaatctaatgtt 309

                                                                       
Query: 181 cgtttccagacatggccgcgccacgcattttgaagcctcggccattctcgatcttctccc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 cgtttccagacatggccgcgccacgcattttgaagcctcggccattctcgatcttctccc 249

                                                           
Query: 241 gtagacttatccgtgatattttcttccttccctgttgctcattagaaa 288
           |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 gtagtcttatccgtgatattttcttccttccctgttgctcattagaaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space:   191361
Effective search space used:   191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)