BAC Information

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BAC

Clone NameMSMg01-190I08
Chromosome7 (Build37)
Map Location 61,458,091 - 61,458,399
singlet/doubletsinglet
Overlap genenone
Upstream geneGm1865, LOC100040718, LOC668789
Downstream geneMrps33p, LOC622146, Luzp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-190I08.T7 (MSMg01no190_i08.b1)MSMg01-190I08.TJ (MSMg01no190_i08.g1)
ACCAG380838AG380839
length703712
length of high quality
(start - end)
314 (37 - 350)277 (82 - 358)
definitionCHROMAT_FILE: MSMg01no190_i08.b1 PHD_FILE: MSMg01no190_i08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:06:48 2005CHROMAT_FILE: MSMg01no190_i08.g1 PHD_FILE: MSMg01no190_i08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:06:48 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTAA
TTTCTTTTATAATACCATGCAGAAACTACTTTCTTCATGAAGAATTCAGT
CATTTTCCTGGAATACTGTTTGGCAACTTGAGATTCCAAAGTCCAAAGTG
AAGACAGTCAACTGCCTTCAAATGTTTTATTCAACTATTTCTTTTCATAA
GTGCTTGTCTGTTTTTGATGCTTTAGCTCAATATATCTTTCTTTCCCAGT
GATTCAAATGGATGTGTGGCATTCACACCCTAATACACACGCAAATGTGC
ATAAATATGCTATACCTTCTGAGTAATTCAAAAGGTATAAAACTGCGAAT
TTTTTTATCTCCCCCCCCATCCATTTGTTAGTGTTTGTTTCTGATGGTCT
TTTACAAGCCAGAAAGAATTCAAATTTACTATATAGCAGCTAGACTTGAA
TTCCTTATCCTCCTTCCCAACTTCCAAGTGCTGGGTTTATATGAATGTAC
CACCATCACTACCACTACTAGATAATTCAAAATGTGATCTTTAAAGCGGA
AAGAATAAATGATATTTGGCAATTAAAATTATCAGAATTATAAGCAAAGG
AGACATGGATTCTAGCAGGGAGTTAATGCACAGATATAAGCGGGTATAGG
GCTCACTTGAACACAGATAACTTAGGAAGAGTTTGTGATGATGATAATAT
TCT
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGTCCTGATCATTCCTGCT
GACTCATGCCAATTCAGCAGAGGCCTTGCAGTTTCTGCTGGATTATGCCA
CCCTTGCTGATTCAGGTTGGTGACACTCTTGAACAGGACTATTGGTATCC
TGATACTACTGAACTTGACTGCTGGTATTCTGACAAGAAGAGACCGGAAT
CACCTCAAGAATTACTTATAAACAAGTTCACATCCCCTTGTCCTATTTAC
TATCTTTCTGTCCTACCTTTAGATGGTGAGAAGATGGGGTGGGGGTCAAA
AGAATTTGTTTTTACTTCCCCCCCCCCCCGTTTTGAAAAATCTAAGCCTA
CAGTTATTCTTTTATTTTTATTTACTATCAAAGTTCGGGAAGTTATAGGA
TGATTTGATTCATCTACTTTCCTTCATGTCTCCAGTATCATCAAACAACT
CTTGAATACTCACTTATTTTTATAAACGAACTAAGTATTTAAGGACTAAA
GCTCACAAGTTTGTGAAATTCAAACTGCATGATACAGTCAAGTTTCTCTC
CTGTTTTTCAACTTTCATTTCCTTATTTGCAAGTTAACAACAATACTGTC
TACTGGGGTGGTTCATTGTGTATCACAACATCCGGTAATGGATATACTTT
TGCTTTACAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no190_i08.b1 MSMg01no190_i08.b1 CHROMAT_FILE:
MSMg01no190_i08.b1 PHD_FILE: MSMg01no190_i08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:06:48 2005
         (314 letters)



>mm_chr7_61457887_61458600
          Length = 714

 Score =  567 bits (293), Expect = e-166
 Identities = 305/309 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttaatttcttttataataccatgcagaaactactttcttcatgaagaattcagt 64
           ||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 513 gaattattaatttcttttataataccatgcagaaactattttcttcatgaagaattcagt 454

                                                                       
Query: 65  cattttcctggaatactgtttggcaacttgagattccaaagtccaaagtgaagacagtca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 cattttcctggaatactgtttggcaacttgagattccaaagtccaaagtgaagacagtca 394

                                                                       
Query: 125 actgccttcaaatgttttattcaactatttcttttcataagtgcttgtctgtttttgatg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 actgccttcaaatgttttattcaactatttcttttcataagtgcttgtctgtttttgatg 334

                                                                       
Query: 185 ctttagctcaatatatctttctttcccagtgattcaaatggatgtgtggcattcacaccc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 ctttagctcaatatatctttctttcccagtgattcaaatggatgtgtggcattcacaccc 274

                                                                       
Query: 245 taatacacacgcaaatgtgcataaatatgctataccttctgagtaattcaaaaggtataa 304
           ||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 273 taatacacatgcaaatgtgcataaatatgctataccttctgaggaattcaaaaggtataa 214

                    
Query: 305 aactgcgaa 313
           |||||||||
Sbjct: 213 aactgcgaa 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 714
Length adjustment: 9
Effective length of query: 305
Effective length of database: 705
Effective search space:   215025
Effective search space used:   215025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)